RAxML

swMATH7716MaRDI QIDQ19733FDOQ19733

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Official website: http://sco.h-its.org/exelixis/web/software/raxml/index.html

Source code repository: https://github.com/stamatak/standard-RAxML

Cited In (only showing first 100 items - show all)

• Phylogenetic estimation with partial likelihood tensors
• SaGePhy
• Effects of discordance between species and gene trees on phylogenetic diversity conservation
• Error detection and correction of gene trees
• Euro-Par 2004 Parallel Processing
• Spectral neighbor joining for reconstruction of latent tree models
• Rearrangements in phylogenetic inference: compare, model, or encode?
• Parallel maximum likelihood estimator for multiple linear regression models
• Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Batch Matrix Exponentiation
• Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids
• The rise of statistical phylogenetics
• wQFM
• Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
• Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications
• Is the protein model assignment problem under linked branch lengths NP-hard?
• Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSO
• Reversible polymorphism-aware phylogenetic models and their application to tree inference
• Characterizing local optima for maximum parsimony
• TRACTION: fast non-parametric improvement of estimated gene trees
• On partial gene transfer and its impact on gene tree reconstruction
• A faster construction of greedy consensus trees
• COBALT
• GapCoder
• Gegenees
• POY
• treeOclock
• Computing nearest neighbour interchange distances between ranked phylogenetic trees
• Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
• Bayesian-weighted triplet and quartet methods for species tree inference
• Quantum channel simulation of phylogenetic branching models
• PhyloGeoTool
• BioWorkbench
• Quantitative immunology for physicists
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• Analysis of Phylogenetics and Evolution with R
• Phase transition in the sample complexity of likelihood-based phylogeny inference
• RAxML-NG
• An extended model for phylogenetic maximum likelihood based on discrete morphological characters
• \textsc{FlipCut} supertrees: towards matrix representation accuracy in polynomial time
• A scalable parallelization of the gene duplication problem
• Genetree
• ape
• BioJava
• fastDNAml
• MrBayes
• PHYLIP
• PAUP*
• BIONJ
• BEAST
• EPoS
• FlipCut
• MAFFT
• MODELTEST
• phangorn
• Seq-Gen
• PhySIC
• Balibase
• Notung
• MEGA
• PAML
• PhyML
• DupTree
• BEAGLE
• BEAUti
• DPRml
• pIQPNNI
• GPUTeraSort
• SplitsTree
• rSPR
• Kalign
• LAGAN
• NAST
• SPRSupertrees
• shazam
• Bali-phy
• Mugsy
• IQ-TREE
• Statalign
• SimPhy
• GRAPPA
• SPAdes
• RIATA-HGT
• DendroPy
• ASTRID
• NINJA
• TNT
• ASTRAL-II
• PhyloNet
• Dendroscope
• PROMALS
• Bio++
• BMGE
• ExaBayes
• Jalview
• INDELible
• iGTP
• OXBench
• MulRF

This page was built for software: RAxML