RAxML
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Phylogenetic estimation with partial likelihood tensors
- Effects of discordance between species and gene trees on phylogenetic diversity conservation
- Error detection and correction of gene trees
- Euro-Par 2004 Parallel Processing
- Spectral neighbor joining for reconstruction of latent tree models
- Rearrangements in phylogenetic inference: compare, model, or encode?
- Parallel maximum likelihood estimator for multiple linear regression models
- Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
- Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- The rise of statistical phylogenetics
- Batch Matrix Exponentiation
- Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
- Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications
- Is the protein model assignment problem under linked branch lengths NP-hard?
- Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSO
- Reversible polymorphism-aware phylogenetic models and their application to tree inference
- Characterizing local optima for maximum parsimony
- TRACTION: fast non-parametric improvement of estimated gene trees
- Genetree
- ape
- BioJava
- fastDNAml
- MrBayes
- PHYLIP
- PAUP*
- BIONJ
- BEAST
- EPoS
- FlipCut
- MAFFT
- MODELTEST
- phangorn
- Seq-Gen
- PhySIC
- Balibase
- Notung
- MEGA
- PAML
- PhyML
- DupTree
- BEAGLE
- BEAUti
- DPRml
- pIQPNNI
- GPUTeraSort
- SplitsTree
- rSPR
- Kalign
- LAGAN
- NAST
- SPRSupertrees
- shazam
- Bali-phy
- Mugsy
- IQ-TREE
- Statalign
- SimPhy
- GRAPPA
- SPAdes
- RIATA-HGT
- DendroPy
- ASTRID
- NINJA
- TNT
- ASTRAL-II
- PhyloNet
- Dendroscope
- PROMALS
- Bio++
- BMGE
- ExaBayes
- Jalview
- INDELible
- iGTP
- OXBench
- MulRF
- Partitionfinder
- PhyloBayes MPI
- ProtTest 3
- BUCKy
- SoDA2
- STEM-hy
- ecceTERA
- FastMe
- FastTree
- DACTAL
- FastRFS
- GIGA
- GASTS
- Swift
- OCTAL
- Nextstrain
- RAxML-Light
- Quartets MaxCut
- PhyloNetworks
- Rec-I-DCM3
- AFContainer
- SuperTriplets
- SuperFine
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