DendroPy
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Cited in
(28)- Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL
- Spectral neighbor joining for reconstruction of latent tree models
- TRACTION: fast non-parametric improvement of estimated gene trees
- BioJava
- Biopython
- RAxML
- Notung
- Mesquite
- SimPhy
- ASTRID
- ETE
- BioRuby
- INDELible
- ProDy
- Bio.Phylo
- MMTK
- PyCogent
- scikit-bio
- OCTAL
- TreeFix
- FAVITES
- PhyloSift
- TreeSwift
- TreeCluster
- RTED
- Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Rapidly computing the phylogenetic transfer index
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