BioJava
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(only showing first 100 items - show all)- Fast structural alignment of biomolecules using a hash table, n-grams and string descriptors
- Biopython
- PHENIX
- GOSim
- MODELTEST
- Taverna
- Spectronet
- PyMOL
- bioperl
- TFMPvalue
- SARSA
- DIAL
- FR3D
- MCQ4Structures
- Bio3d
- FRASS
- FASTA3
- CDK
- Petri nets formalism facilitates analysis of complex biomolecular structural data
- PRALINE
- VARNA
- IQ-TREE
- PseudoViewer3
- R-CHIE
- YACOP
- MUMMER
- JBROWSE
- rBiopaxParser
- DendroPy
- ApE
- Serial Cloner
- QuickGene
- pDRAW32
- GENtle
- Lasergene
- MCQ4Structures to compute similarity of molecule structures
- AWTY
- A novel tool for assisted in-silico cloning and sequence editing in molecular biology
- Consed
- STRAP
- BioRuby
- 3DNA
- STRait Razor
- AMoRe
- MOLREP
- Coot
- GFF-Ex
- RamiGO
- kClust
- CLUSS
- CLAP
- EVEREST
- CATH
- HAMAP
- PIRSF
- OrthoDB
- FunTree
- Gene3D
- Jalview
- SEAVIEW
- PHYLO_WIN
- CINEMA
- Cgaln
- FRESCO
- BRIG
- YASS
- CGView
- Dotlet
- JDotter
- M-GCAT
- modENCODE
- AceView
- GtRNAdb
- FlyBase
- Savant Genome Browser
- MEME-LaB
- piRNABank
- piRBase
- piRNAQuest
- ModuleMaster
- MATCH
- Stampy
- NextGenMap
- HIVE-hexagon
- Ensembl REST
- BioStar
- TICO
- CRITICA
- GeneMarkS
- ZCURVE
- MOCAT
- GOLD
- Conrad
- CONTRAST
- mGene
- REGANOR
- ProtTest 3
- DensiTree
- jModelTest
- PhyloBayes 3
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