Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL

DOI10.4230/LIPICS.WABI.2017.27MaRDI QIDQ5111839zbMATHOpenAlexFDO

Authors Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow

Publication date 27 May 2020

Full work available at URL http://doi.org/10.4230/LIPIcs.WABI.2017.27

zbMATH Keywords

missing dataphylogenomicsgene treescoalescent-based species tree estimation

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

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Cites work

• Comparison of phylogenetic trees
• Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
• Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL
• Split probabilities and species tree inference under the multispecies coalescent model

Cited in

(3)

• Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL
• TRACTION: fast non-parametric improvement of estimated gene trees
• QT-GILD: Quartet based gene tree imputation using deep learning improves phylogenomic analyses despite missing data

Describes a project that uses

Uses Software

• SimPhy
• DendroPy
• ASTRAL-II
• INDELible
• ASTRID
• OCTAL

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