Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent

DOI10.1016/j.tpb.2014.12.005zbMath1331.92111arXiv1409.2051OpenAlexW2052432722WikidataQ30882120 ScholiaQ30882120MaRDI QIDQ5965107

Sebastien Roch, Mike A. Steel

Publication date: 2 March 2016

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1409.2051

zbMATH Keywords

consistencymaximum likelihoodincomplete lineage sortingphylogenetic reconstruction

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

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Uses Software

• STEM-hy
• BUCKy

Cites Work

• Links between maximum likelihood and maximum parsimony under a simple model of site substitution
• The probability of topological concordance of gene trees and species trees.
• Maximum tree: a consistent estimator of the species tree
• Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
• Consistency of Bayesian inference of resolved phylogenetic trees
• Probability Models for DNA Sequence Evolution

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