Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
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Publication:2108905
Abstract: We consider species tree estimation under a standard stochastic model of gene tree evolution that incorporates incomplete lineage sorting (as modeled by a coalescent process) and gene duplication and loss (as modeled by a branching process). Through a probabilistic analysis of the model, we derive sample complexity bounds for widely used quartet-based inference methods that highlight the effect of the duplication and loss rates in both subcritical and supercritical regimes.
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Cited in
(11)- Comparing methods for species tree estimation with gene duplication and loss
- Bayesian-weighted triplet and quartet methods for species tree inference
- Distance-based species tree estimation under the coalescent: information-theoretic trade-off between number of loci and sequence length
- Distance-based species tree estimation: information-theoretic trade-off between number of loci and sequence length under the coalescent
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- Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
- Maximum tree: a consistent estimator of the species tree
- The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference
- Identifying species network features from gene tree quartets under the coalescent model
- Phylogenomic Models from Tree Symmetries
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