Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model

DOI10.1016/J.TPB.2008.10.004MaRDI QIDQ615571zbMATHOpenAlexWikidataFDO

Authors Chen Meng, Laura Salter Kubatko

Publication date 5 January 2011

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2008.10.004

zbMATH Keywords

phylogeneticshybridizationcoalescenceincomplete lineage sortingintrogressionhybrid speciation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Applications of graph theory (05C90) Problems related to evolution (92D15)

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Cites work

• Asymptotic Properties of Maximum Likelihood Estimators and Likelihood Ratio Tests Under Nonstandard Conditions
• Inference from iterative simulation using multiple sequences
• Line-of-descent and genealogical processes, and their applications in population genetics models
• The coalescent
• The probability of topological concordance of gene trees and species trees.

Cited in

(15)

• Meng and Kubatko (2009): modeling hybridization with coalescence
• Classes of explicit phylogenetic networks and their biological and mathematical significance
• The probability distribution of ranked gene trees on a species tree
• A global test of hybrid ancestry from genome-scale data
• Identifiability of level-1 species networks from gene tree quartets
• Do branch lengths help to locate a tree in a phylogenetic network?
• Fifty years of theoretical population biology
• Time to a single hybridization event in a group of species with unknown ancestral history
• The tree of blobs of a species network: identifiability under the coalescent
• \(D_{\text{GEN}}\): a test statistic for detection of general introgression scenarios
• Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
• A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers
• Identifying species network features from gene tree quartets under the coalescent model
• Identifiability of species network topologies from genomic sequences using the logDet distance
• On the effect of intralocus recombination on triplet-based species tree estimation

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