Line-of-descent and genealogical processes, and their applications in population genetics models

DOI10.1016/0040-5809(84)90027-3MaRDI QIDQ761376zbMATH OpenOpenAlexWikidataFDO

Authors Simon Tavaré

Publication date 1984

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0040-5809(84)90027-3

zbMATH Keywords

population geneticsmutationdiffusion approximationsMoran modelreviewneutral modelgenealogical Markov chainsgenealogical processesinfinite alleles modelsinfinite sites modelsKingman coalescent processline-of-descent processesWright-Fisher multiple-allele single locus models

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 3119656 (Why is no real title available?)
• scientific article; zbMATH DE number 3148873 (Why is no real title available?)
• scientific article; zbMATH DE number 3863589 (Why is no real title available?)
• scientific article; zbMATH DE number 3817476 (Why is no real title available?)
• scientific article; zbMATH DE number 3656855 (Why is no real title available?)
• scientific article; zbMATH DE number 3657493 (Why is no real title available?)
• scientific article; zbMATH DE number 3718912 (Why is no real title available?)
• scientific article; zbMATH DE number 3758132 (Why is no real title available?)
• scientific article; zbMATH DE number 3773410 (Why is no real title available?)
• scientific article; zbMATH DE number 3779155 (Why is no real title available?)
• scientific article; zbMATH DE number 3493681 (Why is no real title available?)
• scientific article; zbMATH DE number 3555177 (Why is no real title available?)
• scientific article; zbMATH DE number 3235725 (Why is no real title available?)
• scientific article; zbMATH DE number 3249395 (Why is no real title available?)
• scientific article; zbMATH DE number 3348831 (Why is no real title available?)
• scientific article; zbMATH DE number 3390587 (Why is no real title available?)
• scientific article; zbMATH DE number 3418468 (Why is no real title available?)
• A note on the sampling theory for infinite alleles and infinite sites models
• A transition density expansion for a multi-allele diffusion model
• Addendum to a paper of W. Ewens
• Ages, extinction times, and first passage probabilities for a multiallele diffusion model with irreversible mutation
• Application of the Galton-Watson process to the kin number problem
• Distribution of nucleotide differences between two randomly chosen cistrons in a population of variable size
• Distributions of time to fixation of neutral genes
• Eigenanalysis for the Kolmogorov backward equation for the neutral multi- allelic model
• Ein Grenzwertsatz für subkritische Verzweigungsprozesse mit endlich vielen Typen von Teilchen
• Equilibrium behavior of population genetic models with non-random mating. Part I: Preliminaries and special mating systems
• Exact distributions of kin numbers in a Galton-Watson process
• Exact sampling distributions from the infinite neutral alleles model
• Genetic identity between populations when mutation rates vary within and across loci
• Genetic identity in subdivided populations. I. Two equal-sized subpopulations
• Haploid Populations Subject to Varying Environment: The Characteristic Values and the Rate of Loss of Alleles
• How probable is it to be first born? and other branching-process applications to kinship problems
• Is the most frequent allele the oldest?
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• Loss of alleles in a haploid population with varying environment
• Loss of selectively neutral alleles in small populations and regular mating systems
• Loss of variability at one locus in a finite population
• Mutant substitutions at linked nucleotide sites
• Notes on information in population genetics
• On stochastic population models in genetics
• On the distribution of allele frequencies in a diffusion model
• On the genealogy of nested subsamples from a haploid population
• On the number of segregating sites in genetical models without recombination
• On the past history of an allele now known to have frequencyp
• Reversibility and the age of an allele. I: Moran's infinitely many neutral alleles model
• SOLUTION OF A PROCESS OF RANDOM GENETIC DRIFT WITH A CONTINUOUS MODEL
• Simulating allele frequencies in a population and the genetic differentiation of populations under mutation pressure
• The Characteristic Values and Vectors for a Class of Stochastic Matrices Arising in Genetics
• The Structure of Reduced Critical GALTON-WATSON Processes
• The coalescent
• The distribution of nucleotide site differences between two finite sequences
• The growth and composition of branching populations
• The latent roots of certain Markov chains arising in genetics: A new approach, I. Haploid models
• The lattice models of neutral multi-alleles in population genetics theory
• The number of alleles and segregating sites in a sample from the infinite-alleles model
• The number of distinguishable alleles according to the Ohta-Kimura model of neutral mutation
• The pseudo-transient distribution and its uses in genetics
• The rate of loss of multiple alleles in finite haploid populations
• The sampling theory of selectively neutral alleles
• The stationary distribution of the infinitely-many neutral alleles diffusion model
• The strong-migration limit in geographically structured populations
• The transient behaviour of the Moran model in population genetics
• Transient distribution of the number of segregating sites in a neutral infinite-sites model with no recombination
• Transition Densities for Neutral Multi-Allele Diffusion Models
• Variability in the amount of heterozygosity maintained by neutral mutations
• Wandering phenomena in infinite-allelic diffusion models

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• The site-frequency spectrum of linked sites
• Conditional genealogies and the age of a neutral mutant
• A family of random trees with random edge lengths
• The probability of reciprocal monophyly of gene lineages in three and four species
• Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model
• A note on distributions of times to coalescence, under time-dependent population size
• Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory
• Allele frequencies after a bottleneck
• A transition function expansion for a diffusion model with selection.
• Meng and Kubatko (2009): modeling hybridization with coalescence
• Genealogical theory for random mating populations with two sexes
• Excheangable partitions derived from Markovian coalescents
• Coalescent lineage distributions
• Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
• The tree length of an evolving coalescent
• Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
• Asymptotic results concerning the total branch length of the Bolthausen-Sznitman coalescent
• Distributions of topological tree metrics between a species tree and a gene tree
• Coalescent process with fluctuating population size and its effective size
• Convergence time to the Ewens sampling formula in the infinite alleles Moran model
• A fleming-Viot process and Bayesian nonparametrics
• Smoothing distributions for conditional Fleming-Viot and Dawson-Watanabe diffusions
• The transition distribution of a sample from a Wright-Fisher diffusion with general small mutation rates
• Which locus has the oldest allele?
• Mathematical models, problems, and controversies of evolutionary theory
• Approach to consensus in models of continuous-opinion dynamics: a study inspired by the physics of granular gases
• Segregating sites in Wright's island model
• The non-equilibrium allele frequency spectrum in a Poisson random field framework
• On the moments of the absorption time of Kingman's coalescent
• The effect of migration during the divergence
• Ewens' sampling formula and related formulae: combinatorial proofs, extensions to variable population size and applications to ages of alleles
• The asymptotic behavior of an urn model arising
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• Genealogical histories in structured populations
• The probability of topological concordance of gene trees and species trees.
• Genealogies in simple models of evolution
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Ordering dynamics of the multi-state voter model
• Measuring evolutionary cancer dynamics from genome sequencing, one patient at a time
• The genetic divergence of three populations
• A mathematical formalism for natural selection with arbitrary spatial and genetic structure
• The sampling theory of neutral alleles and an urn model in population genetics
• The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species
• Transition density of an infinite-dimensional diffusion with the jack parameter
• An impossibility result for phylogeny reconstruction from \(k\)-mer counts
• Diffusive clustering in an infinite system of hierarchically interacting diffusions
• Geometric stick-breaking processes for continuous-time Bayesian nonparametric modeling
• scientific article; zbMATH DE number 4100992 (Why is no real title available?)
• Experiments with the site frequency spectrum
• The small world effect on the coalescing time of random walks
• The uniqueness of hierarchically extended backward solutions of the Wright-Fisher model
• The split-and-drift random graph, a null model for speciation
• Exact inference for a class of hidden Markov models on general state spaces
• Diffusion processes and the Ewens sampling formula
• Wright-Fisher revisited: the case of fertility correlation
• Probability of a segregating pattern in a sample of DNA sequences
• Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
• Structured coalescent with nonconservative migration
• The third moments of the site frequency spectrum
• Consolidation rates for two interacting systems in the plane
• Identifiability and reconstructibility of species phylogenies under a modified coalescent
• A simple method for computing exact probabilities of mutation numbers
• The effect on genetic sampling distributions of correlations in reproduction
• The number of lines of descent and fixation probabilities of alleles in the pure genetic drift process: Analytical approximations
• Universality in a class of fragmentation-coalescence processes
• Segregating sites in a gene conversion model with mutation
• On the long term behavior of some finite particle systems
• Computing the probability of gene trees concordant with the species tree in the multispecies coalescent
• The probability distribution of ranked gene trees on a species tree
• Single and simultaneous binary mergers in Wright-Fisher genealogies
• Ancestral inference from haplotypes and mutations
• Wright-Fisher diffusion bridges
• The expected number of alleles in a gene conversion model with mutation
• Theory and applications of a deterministic approximation to the coalescent model
• The \(\lambda\)-Fleming-Viot process and a connection with Wright-Fisher diffusion
• Partition structures, Polya urns, the Ewens sampling formula, and the ages of alleles
• The star-shaped \(\Lambda\)-coalescent and Fleming-Viot process
• Gamma-Dirichlet algebra and applications
• scientific article; zbMATH DE number 3980996 (Why is no real title available?)
• Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action
• Spread of pedigree versus genetic ancestry in spatially distributed populations
• Reversible polymorphism-aware phylogenetic models and their application to tree inference
• Lines of descent and the coalescent
• Some mathematical models from population genetics. École d'Été de Probabilités de Saint-Flour XXXIX-2009
• Developments in coalescent theory from single loci to chromosomes
• Genealogical-tree probabilities in the infinitely-many-site model
• Coalescent theory for a completely random mating monoecious population
• scientific article; zbMATH DE number 4185447 (Why is no real title available?)
• There are no caterpillars in a wicked forest
• The genetic divergence of two populations
• A coalescent dual process in a Moran model with genic selection
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
• The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele
• Dirichlet approximation of equilibrium distributions in Cannings models with mutation
• On the genealogy of a sample of neutral rare alleles.

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