Line-of-descent and genealogical processes, and their applications in population genetics models

DOI10.1016/0040-5809(84)90027-3zbMATH Open0555.92011OpenAlexW2161692256WikidataQ55062617 ScholiaQ55062617MaRDI QIDQ761376FDOQ761376

Authors: Simon Tavaré 

Publication date: 1984

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/0040-5809(84)90027-3

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zbMATH Keywords

population geneticsmutationdiffusion approximationsMoran modelreviewneutral modelgenealogical Markov chainsgenealogical processesinfinite alleles modelsinfinite sites modelsKingman coalescent processline-of-descent processesWright-Fisher multiple-allele single locus models

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10)

Cites Work

• Title not available (Why is that?)
• Title not available (Why is that?)
• The coalescent
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• The sampling theory of selectively neutral alleles
• Addendum to a paper of W. Ewens
• Title not available (Why is that?)
• The Characteristic Values and Vectors for a Class of Stochastic Matrices Arising in Genetics
• The latent roots of certain Markov chains arising in genetics: A new approach, I. Haploid models
• Title not available (Why is that?)
• On the number of segregating sites in genetical models without recombination
• A note on the sampling theory for infinite alleles and infinite sites models
• Title not available (Why is that?)
• The strong-migration limit in geographically structured populations
• A transition density expansion for a multi-allele diffusion model
• The pseudo-transient distribution and its uses in genetics
• SOLUTION OF A PROCESS OF RANDOM GENETIC DRIFT WITH A CONTINUOUS MODEL
• Title not available (Why is that?)
• On the distribution of allele frequencies in a diffusion model
• The stationary distribution of the infinitely-many neutral alleles diffusion model
• The growth and composition of branching populations
• The transient behaviour of the Moran model in population genetics
• Loss of variability at one locus in a finite population
• Mutant substitutions at linked nucleotide sites
• Title not available (Why is that?)
• The number of distinguishable alleles according to the Ohta-Kimura model of neutral mutation
• Eigenanalysis for the Kolmogorov backward equation for the neutral multi- allelic model
• Variability in the amount of heterozygosity maintained by neutral mutations
• The lattice models of neutral multi-alleles in population genetics theory
• Exact distributions of kin numbers in a Galton-Watson process
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• Reversibility and the age of an allele. I: Moran's infinitely many neutral alleles model
• Simulating allele frequencies in a population and the genetic differentiation of populations under mutation pressure
• On the past history of an allele now known to have frequencyp
• Exact sampling distributions from the infinite neutral alleles model
• Title not available (Why is that?)
• Transition Densities for Neutral Multi-Allele Diffusion Models
• On the genealogy of nested subsamples from a haploid population
• Title not available (Why is that?)
• Transient distribution of the number of segregating sites in a neutral infinite-sites model with no recombination
• The number of alleles and segregating sites in a sample from the infinite-alleles model
• Distributions of time to fixation of neutral genes
• The rate of loss of multiple alleles in finite haploid populations
• The distribution of nucleotide site differences between two finite sequences
• Equilibrium behavior of population genetic models with non-random mating. Part I: Preliminaries and special mating systems
• Loss of selectively neutral alleles in small populations and regular mating systems
• Genetic identity between populations when mutation rates vary within and across loci
• How probable is it to be first born? and other branching-process applications to kinship problems
• Loss of alleles in a haploid population with varying environment
• Distribution of nucleotide differences between two randomly chosen cistrons in a population of variable size
• Is the most frequent allele the oldest?
• Ages, extinction times, and first passage probabilities for a multiallele diffusion model with irreversible mutation
• Genetic identity in subdivided populations. I. Two equal-sized subpopulations
• Notes on information in population genetics
• Application of the Galton-Watson process to the kin number problem
• Title not available (Why is that?)
• Wandering phenomena in infinite-allelic diffusion models
• Title not available (Why is that?)
• The Structure of Reduced Critical GALTON-WATSON Processes
• On stochastic population models in genetics
• Haploid Populations Subject to Varying Environment: The Characteristic Values and the Rate of Loss of Alleles
• Ein Grenzwertsatz für subkritische Verzweigungsprozesse mit endlich vielen Typen von Teilchen

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• Ordering dynamics of the multi-state voter model
• Measuring evolutionary cancer dynamics from genome sequencing, one patient at a time
• Transition density of an infinite-dimensional diffusion with the jack parameter
• The genetic divergence of three populations
• A mathematical formalism for natural selection with arbitrary spatial and genetic structure
• The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species
• An impossibility result for phylogeny reconstruction from \(k\)-mer counts
• Title not available (Why is that?)
• The uniqueness of hierarchically extended backward solutions of the Wright-Fisher model
• The split-and-drift random graph, a null model for speciation
• Diffusion processes and the Ewens sampling formula
• Wright-Fisher revisited: the case of fertility correlation
• Probability of a segregating pattern in a sample of DNA sequences
• Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
• The third moments of the site frequency spectrum
• The number of lines of descent and fixation probabilities of alleles in the pure genetic drift process: Analytical approximations
• A simple method for computing exact probabilities of mutation numbers
• The effect on genetic sampling distributions of correlations in reproduction
• Segregating sites in a gene conversion model with mutation
• On the long term behavior of some finite particle systems
• Computing the probability of gene trees concordant with the species tree in the multispecies coalescent
• Single and simultaneous binary mergers in Wright-Fisher genealogies
• The \(\lambda\)-Fleming-Viot process and a connection with Wright-Fisher diffusion
• The expected number of alleles in a gene conversion model with mutation
• Ancestral inference from haplotypes and mutations
• Wright-Fisher diffusion bridges
• Theory and applications of a deterministic approximation to the coalescent model
• The star-shaped \(\Lambda\)-coalescent and Fleming-Viot process
• Gamma-Dirichlet algebra and applications
• Developments in coalescent theory from single loci to chromosomes
• Coalescent theory for a completely random mating monoecious population
• There are no caterpillars in a wicked forest
• Dirichlet approximation of equilibrium distributions in Cannings models with mutation
• Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
• Spatial population models
• Propagation of chaos in a coagulation model
• Two chromosomes with multigene families
• Central limit theorem for the size of the range of a renewal process
• Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory
• The bounded coalescent model: conditioning a genealogy on a minimum root date
• A numerical method for calculating moments of coalescent times in finite populations with selection
• Asymptotic line-of-descent distributions
• On the genealogy of populations: trees, branches and offspring
• Lines of descent under selection
• Predictive inference with Fleming-Viot-driven dependent Dirichlet processes
• Exact Markov chain and approximate diffusion solution for haploid genetic drift with one-way mutation
• Interpretation of findings of founder population genetics studies applying lineage extinction theory
• Dual process in the two-parameter Poisson-Dirichlet diffusion
• Average abundancy of cooperation in multi-player games with random payoffs
• The joint allele frequency spectrum of multiple populations: a coalescent theory approach
• Allele frequencies in multigene families. II: Coalescent approach
• Bayesian inference of selection in the Wright-Fisher diffusion model
• The probability of reciprocal monophyly of gene lineages in three and four species
• Meng and Kubatko (2009): modeling hybridization with coalescence
• Allele frequencies after a bottleneck
• Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
• Distributions of topological tree metrics between a species tree and a gene tree
• Convergence time to the Ewens sampling formula in the infinite alleles Moran model
• Smoothing distributions for conditional Fleming-Viot and Dawson-Watanabe diffusions
• Which locus has the oldest allele?
• The asymptotic behavior of an urn model arising
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• The sampling theory of neutral alleles and an urn model in population genetics
• Diffusive clustering in an infinite system of hierarchically interacting diffusions
• Geometric stick-breaking processes for continuous-time Bayesian nonparametric modeling
• Experiments with the site frequency spectrum
• The small world effect on the coalescing time of random walks
• Exact inference for a class of hidden Markov models on general state spaces
• Structured coalescent with nonconservative migration
• Consolidation rates for two interacting systems in the plane
• Identifiability and reconstructibility of species phylogenies under a modified coalescent
• Universality in a class of fragmentation-coalescence processes
• The probability distribution of ranked gene trees on a species tree
• Partition structures, Polya urns, the Ewens sampling formula, and the ages of alleles
• Title not available (Why is that?)
• Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action
• Spread of pedigree versus genetic ancestry in spatially distributed populations
• Reversible polymorphism-aware phylogenetic models and their application to tree inference
• Lines of descent and the coalescent
• Some mathematical models from population genetics. École d'Été de Probabilités de Saint-Flour XXXIX-2009
• Title not available (Why is that?)
• Genealogical-tree probabilities in the infinitely-many-site model
• The genetic divergence of two populations
• A coalescent dual process in a Moran model with genic selection
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele
• On the genealogy of a sample of neutral rare alleles.
• An approximate likelihood for genetic data under a model with recombination and population splitting
• Summary statistics of neutral mutations in longitudinal DNA samples
• Site frequency spectra from genomic SNP surveys
• The coalescence time of sampled genes in the structured coalescent model
• The coalescent in two colonies with symmetric migration
• Times on trees, and the age of an allele
• On the validity of the log-Sobolev inequality for symmetric Fleming-Viot operators.
• Optimal filtering and the dual process
• Analysis of market weights under volatility-stabilized market models
• Effective population size of a population with stochastically varying size
• The distribution of \(F_{st}\) and other genetic statistics for a class of population structure models
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination

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