Recombination as a point process along sequences

DOI10.1006/TPBI.1998.1403MaRDI QIDQ1296932zbMATHOpenAlexWikidataFDO

Authors Carsten Wiuf, Jotun Hein

Publication date 3 August 1999

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://semanticscholar.org/paper/b3baad11568f40f2182c6362d49e9d29f330f43f

zbMATH Keywords

algorithmcoalescencerecombinations

Mathematics Subject Classification ID

Point processes (e.g., Poisson, Cox, Hawkes processes) (60G55) Problems related to evolution (92D15) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Markov jump processes in modeling coalescent with recombination
• Markovian approximation to the finite loci coalescent with recombination along multiple sequences
• A Markov chain model of coalescence with recombination
• The time to the ancestor along sequences with recombination

Cites work

• scientific article; zbMATH DE number 3762932 (Why is no real title available?)
• scientific article; zbMATH DE number 486467 (Why is no real title available?)
• scientific article; zbMATH DE number 1094270 (Why is no real title available?)
• scientific article; zbMATH DE number 1094276 (Why is no real title available?)
• Line-of-descent and genealogical processes, and their applications in population genetics models
• On the number of segregating sites in genetical models without recombination
• On the two-locus sampling distribution
• Properties of a neutral allele model with intragenic recombination
• The coalescent
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination

Cited in

(24)

• Markov jump processes in modeling coalescent with recombination
• A Markov chain model of coalescence with recombination
• Invariant measures of genetic recombination processes
• The distribution of waiting distances in ancestral recombination graphs
• The geometry of recombination
• Asymptotic results concerning the total branch length of the Bolthausen-Sznitman coalescent
• Computing the joint distribution of the total tree length across loci in populations with variable size
• Editorial: Coalescent theory has many new branches
• Sequential Markov coalescent algorithms for population models with demographic structure
• Probability that a sequence is lost without trace under the neutral Wright-Fisher model with recombination
• A sequentially Markov conditional sampling distribution for structured populations with migration and recombination
• The tree length of an evolving coalescent
• Developments in coalescent theory from single loci to chromosomes
• A renewal theory approach to IBD sharing
• The distribution of surviving blocks of an ancestral genome
• Evolution of the ancestral recombination graph along the genome in case of selective sweep
• A non-zero variance of Tajima's estimator for two sequences even for infinitely many unlinked loci
• scientific article; zbMATH DE number 1836437 (Why is no real title available?)
• Markovian approximation to the finite loci coalescent with recombination along multiple sequences
• On the joint distribution of tree height and tree length under the coalescent
• Genealogical distances under low levels of selection
• Coalescent simulation in continuous space: algorithms for large neighbourhood size
• Modeling the effect of inbreeding among founders in linkage analysis
• Exact Decoding of a Sequentially Markov Coalescent Model in Genetics

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