A sequentially Markov conditional sampling distribution for structured populations with migration and recombination

DOI10.1016/j.tpb.2012.08.004zbMath1296.92170arXiv1208.5086OpenAlexW2154397560WikidataQ36494838 ScholiaQ36494838MaRDI QIDQ743263

Yun S. Song, Matthias Steinrücken, Joshua S. Paul

Publication date: 23 September 2014

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1208.5086

zbMATH Keywords

hidden Markov modelmigrationrecombinationstructured coalescentconditional sampling distributionsequentially Markov coalescent

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10)

Related Items (3)

Developments in coalescent theory from single loci to chromosomes ⋮ Computational Inference Beyond Kingman's Coalescent ⋮ Editorial: Coalescent theory has many new branches

Uses Software

• IMPUTE
• MaCH
• HapMix

Cites Work

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• Can one learn history from the allelic spectrum?
• An approximate likelihood for genetic data under a model with recombination and population splitting
• Recombination as a point process along sequences
• Inference in hidden Markov models.
• Importance sampling and the two-locus model with subdivided population structure
• Inference in Molecular Population Genetics
• Importance sampling on coalescent histories. I
• Importance sampling on coalescent histories. II: Subdivided population models

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