Inference in Molecular Population Genetics
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Publication:4512931
DOI10.1111/1467-9868.00254zbMATH Open0962.62107OpenAlexW2040640649MaRDI QIDQ4512931FDOQ4512931
Authors: Matthew Stephens, Peter Donnelly 
Publication date: 19 June 2001
Published in: Journal of the Royal Statistical Society Series B: Statistical Methodology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1111/1467-9868.00254
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Cited In (59)
- Simulation algorithms for integrals of a class of sampling distributions arising in population genetics
- Ancestral graph with bias in gene conversion
- Editorial for the special issue on models and inference in population genetics
- Read mapping on genome variation graphs
- Inference problems in population genetics: DNA sequences, restriction endonucleases and ascertainment sampling
- Statistical tools for seed bank detection
- Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
- Inductive determination of allele frequency spectrum probabilities in structured populations
- Importance sampling and the two-locus model with subdivided population structure
- Stopping-Time Resampling for Sequential Monte Carlo Methods
- A likelihood approach to analysis of network data
- An empirical approach to demographic inference with genomic data
- Experiments with the site frequency spectrum
- Inference from gene trees in a subdivided population
- Gene mapping via the ancestral recombination graph
- A vectorized method of importance sampling with applications to models of mutation and migration
- Importance sampling on coalescent histories. I
- Inferring the demographic history from DNA sequences: an importance sampling approach based on non-homogeneous processes
- Sequential Monte Carlo with transformations
- Enumeration of binary trees compatible with a perfect phylogeny
- Full likelihood inference from the site frequency spectrum based on the optimal tree resolution
- Consistency of estimators of the population-scaled recombination rate
- A dual process for the coupled Wright-Fisher diffusion
- Maximum likelihood estimators for scaled mutation rates in an equilibrium mutation-drift model
- Perfect simulation from population genetic models with selection.
- Ancestral inference from haplotypes and mutations
- Computational inference beyond Kingman's coalescent
- The time machine: a simulation approach for stochastic trees
- The stationary distribution of allele frequencies when selection acts at unlinked loci
- An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations
- Adaptive multiple importance sampling
- Approximate Bayesian computation: a survey on recent results
- Editorial: Coalescent theory has many new branches
- Developments in coalescent theory from single loci to chromosomes
- Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium
- A sequentially Markov conditional sampling distribution for structured populations with migration and recombination
- An asymptotic sampling formula for the coalescent with recombination
- Times on trees, and the age of an allele
- Partition Weighted Approach For Estimating the Marginal Posterior Density With Applications
- Bayesian parameter inference for partially observed stopped processes
- A note on the accuracy of PAC-likelihood inference with microsatellite data
- Microsatellite evolution: Markov transition functions for a suite of models
- Statistical advances and challenges for analyzing correlated high dimensional SNP data in genomic study for complex diseases
- Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
- Importance sampling for lambda-coalescents in the infinitely many sites model
- Exact limits of inference in coalescent models
- Bayesian nonparametric analysis of Kingman's coalescent
- A Bayesian method for detecting and characterizing allelic heterogeneity and boosting signals in genome-wide association studies
- Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations
- Resampling: an improvement of importance sampling in varying population size models
- Allele frequency spectra in structured populations: novel-allele probabilities under the labelled coalescent
- Inference and rare event simulation for stopped Markov processes via reverse-time sequential Monte Carlo
- An extended model for phylogenetic maximum likelihood based on discrete morphological characters
- Importance sampling for the infinite sites model
- Consistency of estimators of population scaled parameters using composite likelihood
- Inferring population genetic parameters: particle filtering, HMM, Ripley's \(K\)-function or runs of homozygosity?
- Closed-form asymptotic sampling distributions under the coalescent with recombination for an arbitrary number of loci
- Efficiently inferring the demographic history of many populations with allele count data
- Importance sampling on coalescent histories. II: Subdivided population models
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