Inferring the demographic history from DNA sequences: an importance sampling approach based on non-homogeneous processes

DOI10.1016/J.TPB.2016.05.004MaRDI QIDQ2362544zbMATH OpenOpenAlexWikidataFDO

Authors S. Ait Kaci Azzou, Fabrice Larribe, Sorana Froda

Publication date 10 July 2017

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2016.05.004

zbMATH Keywords

calibrated skywis plotcoalescent processeffective population sizeimportance samplingnon-homogeneous processes

Mathematics Subject Classification ID

Point processes (e.g., Poisson, Cox, Hawkes processes) (60G55) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Resampling: an improvement of importance sampling in varying population size models
• Importance sampling on coalescent histories. I
• Importance sampling on coalescent histories. II: Subdivided population models
• Inference in Molecular Population Genetics
• Inferring population history from genealogical trees

Cites work

• Ancestral inference in population genetics
• Coalescent theory. An introduction
• Handbook of Statistical Genetics
• scientific article; zbMATH DE number 2126323 (Why is no real title available?)
• scientific article; zbMATH DE number 3817476 (Why is no real title available?)
• Inference in Molecular Population Genetics
• Inferring the demographic history from DNA sequences: an importance sampling approach based on non-homogeneous processes
• Simulation.

Cited in

(3)

• An empirical approach to demographic inference with genomic data
• Inferring the demographic history from DNA sequences: an importance sampling approach based on non-homogeneous processes
• Importance sampling on coalescent histories. I

Describes a project that uses

Uses Software

• fastsimcoal
• Matlab

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