Coalescent theory. An introduction
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Publication:5282824
zbMATH Open1366.92001MaRDI QIDQ5282824FDOQ5282824
Authors: John Wakeley 
Publication date: 17 July 2017
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Cited In (only showing first 100 items - show all)
- Phase-type distributions in population genetics
- Theories of population variation in genes and genomes
- Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population
- On the joint distribution of tree height and tree length under the coalescent
- The process of most recent common ancestors in an evolving coalescent
- Lineages-through-time plots of neutral models for speciation
- Social evolution and genetic interactions in the short and long term
- Mathematical population genetics. I: Theoretical introduction.
- Variances and covariances of linear summary statistics of segregating sites
- Convergence to the structured coalescent process
- Local fluctuations of genetic processes defined on two time scales, with applications to effective size estimation
- Effective population size in simple infectious disease models
- Variance and limiting distribution of coalescence times in a diploid model of a consanguineous population
- Topological linkage disequilibrium calculated from coalescent genealogies
- An individual-based model for the Lenski experiment, and the deceleration of the relative fitness
- How mutation affects evolutionary games on graphs
- Prosperity is associated with instability in dynamical networks
- Title not available (Why is that?)
- Zig-Zag Sampling for Discrete Structures and Nonreversible Phylogenetic MCMC
- A non-zero variance of Tajima's estimator for two sequences even for infinitely many unlinked loci
- Epistasis can increase multivariate trait diversity in haploid non-recombining populations
- Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
- Partitioning, duality, and linkage disequilibria in the Moran model with recombination
- Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action
- Editorial: Coalescent theory has many new branches
- The internal branch lengths of the Kingman coalescent
- Tree lengths for general \(\Lambda \)-coalescents and the asymptotic site frequency spectrum around the Bolthausen-Sznitman coalescent
- Competing islands limit the rate of adaptation in structured populations
- The effect of inbreeding constraints and offspring distribution on time to the most recent common ancestor
- The conditional ancestral selection graph with strong balancing selection
- The ubiquitous Ewens sampling formula
- Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
- On the size distribution of private microsatellite alleles
- Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2
- On spatial coalescents with multiple mergers in two dimensions
- Recursions for the exchangeable partition function of the seedbank coalescent
- Computing the joint distribution of the total tree length across loci in populations with variable size
- Estimating the relative rate of recombination to mutation in bacteria from single-locus variants using composite likelihood methods
- Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
- Mutation-selection equilibrium in games with multiple strategies
- Fixation probabilities in evolutionary dynamics under weak selection
- Recent progress in coalescent theory.
- Hypothesis testing near singularities and boundaries
- Coalescing into the 21st century: An overview and prospects of coalescent theory
- Modeling sequence evolution in acute HIV-1 infection
- Exact limits of inference in coalescent models
- Generalized population models and the nature of genetic drift
- Bayesian-weighted triplet and quartet methods for species tree inference
- A survey of migration-selection models in population genetics
- Bayesian inference of selection in the Wright-Fisher diffusion model
- Measures of success in a class of evolutionary models with fixed population size and structure
- An alternative derivation of the stationary distribution of the multivariate neutral Wright-Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data
- Estimation of parameters in large offspring number models and ratios of coalescence times
- Quantifying genetic innovation: mathematical foundations for the topological study of reticulate evolution
- Neutral community theory: How stochasticity and dispersal-limitation can explain species coexistence
- Title not available (Why is that?)
- The mapping of epistatic effects onto a genealogical tree in haploid populations
- Coalescent models derived from birth-death processes
- Tokunaga and Horton self-similarity for level set trees of Markov chains
- Evolutionary multiplayer games
- The existence and abundance of ghost ancestors in biparental populations
- Probability and manipulation: evolution and simulation in applied population genetics
- Single-crossover recombination and ancestral recombination trees
- Strategy abundance in evolutionary many-player games with multiple strategies
- A game-theoretical dynamic imitation model on networks
- Multivariate phase-type theory for the site frequency spectrum
- A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent
- Global migration can lead to stronger spatial selection than local migration
- Population growth combined with wide offspring distributions can increase fixation rate and reduce genetic diversity
- Population structure and coalescence in pedigrees: comparisons to the structured coalescent and a framework for inference
- Fixation probabilities of strategies for bimatrix games in finite populations
- Inference in population genetics using forward and backward, discrete and continuous time processes
- Game-theoretical approach for opinion dynamics on social networks
- Statistical tools for seed bank detection
- A mathematical formalism for natural selection with arbitrary spatial and genetic structure
- Spectral neighbor joining for reconstruction of latent tree models
- Identifiability of phylogenetic parameters from \(k\)-mer data under the coalescent
- Identifying species network features from gene tree quartets under the coalescent model
- An ancestral process with selection in an ecological community
- The evolving Moran genealogy
- Linearization of the Kingman coalescent
- The third moments of the site frequency spectrum
- Inferring the demographic history from DNA sequences: an importance sampling approach based on non-homogeneous processes
- Enumeration of binary trees compatible with a perfect phylogeny
- The Wright-Fisher site frequency spectrum as a perturbation of the coalescent's
- Spatially explicit neutral models for population genetics and community ecology: extensions of the Neyman-Scott clustering process
- Non-parametric estimation of population size changes from the site frequency spectrum
- A compendium of covariances and correlation coefficients of coalescent tree properties
- Markov genealogy processes
- The coalescent tree of a Markov branching process with generalised logistic growth
- Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications
- An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations
- Time to extinction of a cultural trait in an overlapping generation model
- Statistical challenges in tracking the evolution of SARS-CoV-2
- Separation of timescales for the seed bank diffusion and its jump-diffusion limit
- Developments in coalescent theory from single loci to chromosomes
- Genealogy of a Wright-Fisher Model with Strong SeedBank Component
- Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
- Time to the MRCA of a sample in a Wright-Fisher model with variable population size
- On the enumeration of leaf-labeled increasing trees with arbitrary node-degree
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