Modeling sequence evolution in acute HIV-1 infection

DOI10.1016/J.JTBI.2009.07.038zbMATH Open1403.92296OpenAlexW2013914180WikidataQ37384535 ScholiaQ37384535MaRDI QIDQ1628892FDOQ1628892

Authors: Ha Youn Lee, Brandon F. Keele, Brian Gaschen, Gayathri S. Athreya, Jesus F. Salazar-Gonzalez, Kimmy T. Pham, Paul A. Goepfert, J. Michael Kilby, Michael S. Saag, Eric L. Delwart, Michael Busch, Beatrice H. Hahn, G. Shaw, Bette T. Korber, T. Bhattacharya, Alan S. Perelson, Elena Edi Giorgi 

Publication date: 11 December 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc2760689

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zbMATH Keywords

HIV-1population dynamicsviral evolution

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Medical epidemiology (92C60) Epidemiology (92D30) Research exposition (monographs, survey articles) pertaining to biology (92-02)

Cites Work

• Coalescent theory. An introduction
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• Stochastic modeling of the dynamics of \(CD4^ +\) \(T\)-cell infection by HIV and some Monte Carlo studies
• Viral load and stochastic mutation in a Monte Carlo simulation of HIV
• A stochastic modeling of early HIV-1 population dynamics
• Monte Carlo estimates of natural variation in HIV infection
• Title not available (Why is that?)
• Two‐Sample Tests for Comparing Intra‐Individual Genetic Sequence Diversity between Populations

Cited In (10)

• Title not available (Why is that?)
• Estimating the approximate analytical solution of HIV viral dynamic model by using homotopy analysis method
• An accurate approximation for the expected site frequency spectrum in a Galton-Watson process under an infinite sites mutation model
• Modeling sequence evolution in HIV-1 infection with recombination
• Time distribution for persistent viral infection
• Constructing lower-bounds for CTL escape rates in early SIV infection
• Inference of fitness values and putative appearance time points for evolvable self-replicating molecules from time series of occurrence frequencies in an evolution reactor
• Modelling the impact of acute infection dynamics on the accumulation of HIV-1 mutations
• Sampling HIV intrahost genealogies based on a model of acute stage CTL response
• Title not available (Why is that?)

Uses Software

• BEAST

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