Modeling sequence evolution in acute HIV-1 infection

DOI10.1016/J.JTBI.2009.07.038MaRDI QIDQ1628892zbMATH OpenOpenAlexWikidataFDO

Authors Ha Youn Lee, Brandon F. Keele, Brian Gaschen, Gayathri S. Athreya, Jesus F. Salazar-Gonzalez, Kimmy T. Pham, Paul A. Goepfert, J. Michael Kilby, Michael S. Saag, Eric L. Delwart, Michael Busch, Beatrice H. Hahn, G. Shaw, Bette T. Korber, T. Bhattacharya, Alan S. Perelson, Elena Edi Giorgi

Publication date 11 December 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc2760689

zbMATH Keywords

HIV-1population dynamicsviral evolution

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Medical epidemiology (92C60) Epidemiology (92D30) Research exposition (monographs, survey articles) pertaining to biology (92-02)

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Cites work

• scientific article; zbMATH DE number 3126031 (Why is no real title available?)
• scientific article; zbMATH DE number 3778510 (Why is no real title available?)
• scientific article; zbMATH DE number 46578 (Why is no real title available?)
• A stochastic modeling of early HIV-1 population dynamics
• Coalescent theory. An introduction
• Monte Carlo estimates of natural variation in HIV infection
• Stochastic modeling of the dynamics of CD4^ + T-cell infection by HIV and some Monte Carlo studies
• Two‐Sample Tests for Comparing Intra‐Individual Genetic Sequence Diversity between Populations
• Viral load and stochastic mutation in a Monte Carlo simulation of HIV

Cited in

(10)

• scientific article; zbMATH DE number 5888322 (Why is no real title available?)
• Estimating the approximate analytical solution of HIV viral dynamic model by using homotopy analysis method
• An accurate approximation for the expected site frequency spectrum in a Galton-Watson process under an infinite sites mutation model
• Modeling sequence evolution in HIV-1 infection with recombination
• Time distribution for persistent viral infection
• Constructing lower-bounds for CTL escape rates in early SIV infection
• Inference of fitness values and putative appearance time points for evolvable self-replicating molecules from time series of occurrence frequencies in an evolution reactor
• Modelling the impact of acute infection dynamics on the accumulation of HIV-1 mutations
• Sampling HIV intrahost genealogies based on a model of acute stage CTL response
• scientific article; zbMATH DE number 1262302 (Why is no real title available?)

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