BEAST
From MaRDI portal
Cited in
(only showing first 100 items - show all)- SurvGPR
- hdtg
- adapref
- TruncatedNormal
- On incomplete sampling under birth-death models and connections to the sampling-based coalescent
- Modeling sequence evolution in acute HIV-1 infection
- The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
- ape
- Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
- Exact and approximate limit behaviour of the Yule tree's cophenetic index
- Exact limits of inference in coalescent models
- Sampling-through-time in birth-death trees
- Objective Bayesian analysis for Gaussian hierarchical models with intrinsic conditional autoregressive priors
- The coalescence of intrahost HIV lineages under symmetric CTL attack
- fastDNAml
- MrBayes
- RAxML
- PAUP*
- Seq-Gen
- phangorn
- Bayesian-weighted triplet and quartet methods for species tree inference
- Coalescent models derived from birth-death processes
- MEGA
- Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
- Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications
- Enumeration of binary trees compatible with a perfect phylogeny
- Statistical challenges in tracking the evolution of SARS-CoV-2
- Phylogenetic network dissimilarity measures that take branch lengths into account
- Developments in coalescent theory from single loci to chromosomes
- Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting
- An extended model for phylogenetic maximum likelihood based on discrete morphological characters
- Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
- Stochastic epidemic models inference and diagnosis with Poisson random measure data augmentation
- Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
- PhyML
- Consistency and identifiability of the polymorphism-aware phylogenetic models
- Sequential Monte Carlo with transformations
- Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
- Arlequin
- LAMARC
- Consistency of a phylogenetic tree maximum likelihood estimator
- Finding outbreak trees in networks with limited information
- A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
- Demographic inference under the coalescent in a spatial continuum
- Genetic demographic networks: mathematical model and applications
- simuPOP
- Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies
- Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
- Sampling HIV intrahost genealogies based on a model of acute stage CTL response
- BEAGLE
- BEAUti
- DPRml
- pIQPNNI
- GPUTeraSort
- rSPR
- Modeling sequence evolution in HIV-1 infection with recombination
- Inferring contagion patterns in social contact networks with limited infection data
- BioWar
- SPRSupertrees
- Fitting stochastic epidemic models to gene genealogies using linear noise approximation
- rwty
- Bali-phy
- IQ-TREE
- Protein domain hierarchy Gibbs sampling strategies
- Phylo-MCOA
- The space of ultrametric phylogenetic trees
- phylodyn
- TOPD/FMTS
- kdetrees
- ASTRAL-II
- PhyloNet
- Dendroscope
- ACEMD
- Uncertainty in Phylogenetic Tree Estimates
- Partition Weighted Approach For Estimating the Marginal Posterior Density With Applications
- Partitionfinder
- DensiTree
- Tracer
- HyPhy
- tree-structured-covariance
- gleamviz
- spr_neighbors
- STEM-hy
- BUCKy
- diversitree
- Rphylopars
- phyloTop
- bmds
- PhyloNetwork
- FastTree
- SuperFine
- TNT
- DACTAL
- Rec-I-DCM3
- Quartets MaxCut
- NINJA
- Nextstrain
- StarBEAST2
- SDLNewick
- AFContainer
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