BEAST

swMATH12588MaRDI QIDQ24514FDOQ24514

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Official website: http://beast2.org/

Described by source

• Bayesian evolutionary analysis with BEAST

Cited In (only showing first 100 items - show all)

• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• hdtg
• Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
• Inferring contagion patterns in social contact networks with limited infection data
• The coalescence of intrahost HIV lineages under symmetric CTL attack
• Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
• Objective Bayesian analysis for Gaussian hierarchical models with intrinsic conditional autoregressive priors
• Sampling-through-time in birth-death trees
• Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
• ape
• fastDNAml
• MrBayes
• RAxML
• PAUP*
• phangorn
• Seq-Gen
• MEGA
• PhyML
• Arlequin
• LAMARC
• simuPOP
• BEAGLE
• BEAUti
• DPRml
• pIQPNNI
• GPUTeraSort
• rSPR
• BioWar
• SPRSupertrees
• rwty
• Bali-phy
• IQ-TREE
• NINJA
• Phylo-MCOA
• TNT
• phylodyn
• ASTRAL-II
• kdetrees
• TOPD/FMTS
• PhyloNet
• Dendroscope
• ACEMD
• DensiTree
• HyPhy
• Partitionfinder
• BUCKy
• gleamviz
• Tracer
• tree-structured-covariance
• spr_neighbors
• STEM-hy
• diversitree
• Rphylopars
• phyloTop
• bmds
• PhyloNetwork
• FastTree
• DACTAL
• Nextstrain
• Quartets MaxCut
• Rec-I-DCM3
• AFContainer
• SuperFine
• StarBEAST2
• SDLNewick
• ccaPP
• logKDE
• SPhyR
• fastsimcoal
• PoMo
• InterMap3D
• ForSim
• phyloXML
• SimMLST
• Exact limits of inference in coalescent models
• SIMCOAL
• ATV
• treeOclock
• treeio
• Computing nearest neighbour interchange distances between ranked phylogenetic trees
• Discrete coalescent trees
• The space of ultrametric phylogenetic trees
• Slicing and dicing the genome: A statistical physics approach to population genetics
• Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent
• Coalescent models derived from birth-death processes
• Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
• Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies
• RAxML-NG
• Calculations for multi-type age-dependent binary branching processes
• TruncatedNormal
• Estimating transmission from genetic and epidemiological data: a metric to compare transmission trees
• Efficiently inferring pairwise subtree prune-and-regraft adjacencies between phylogenetic trees
• Combinatorial perspectives on Dollo-\(k\) characters in phylogenetics
• A representation-theoretic approach to the calculation of evolutionary distance in bacteria
• Exact and approximate limit behaviour of the Yule tree's cophenetic index
• Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
• Modeling sequence evolution in HIV-1 infection with recombination
• Demographic inference under the coalescent in a spatial continuum
• Sequential Monte Carlo with transformations
• Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods

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