rSPR

MaRDI QIDQ24975swMATHFDO

Official website https://github.com/cwhidden/rspr

Source code repository https://github.com/cwhidden/rspr

Described by source

• Fixed-parameter algorithms for maximum agreement forests

Cited in

(23)

• A parameterized algorithm for the maximum agreement forest problem on multiple rooted multifurcating trees
• Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
• On unrooted and root-uncertain variants of several well-known phylogenetic network problems
• Faster exact computation of rSPR distance
• Gene tree reconciliation including transfers with replacement is NP-hard and FPT
• FastHN
• HybridNET
• SPRSupertrees
• A duality based 2-approximation algorithm for maximum agreement forest
• Fixed-parameter and approximation algorithms for maximum agreement forests of multifurcating trees
• An improved approximation algorithm for rSPR distance
• RIATA-HGT
• T-REX
• PhyloNet
• Improved approximation algorithm for maximum agreement forest of two rooted binary phylogenetic trees
• spr_neighbors
• tcp_package
• Constructing minimal phylogenetic networks from softwired clusters is fixed parameter tractable
• Parameterized and approximation algorithms for maximum agreement forest in multifurcating trees
• A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers
• treeOclock
• Approximating maximum agreement forest on multiple binary trees
• Computing nearest neighbour interchange distances between ranked phylogenetic trees

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