fastDNAml
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FastDNAml
Cited in
(only showing first 100 items - show all)- Landscapes on spaces of trees
- A new method of finding component orthogonal arrays for order-of-addition experiments
- Dimensional reduction for the general Markov model on phylogenetic trees
- Entanglement invariants and phylogenetic branching
- Cases in which ancestral maximum likelihood will be confusingly misleading
- Bootstrapping a method of phylogenetic inference
- Analytic solutions of maximum likelihood on forks of four taxa
- Polyhedral geometry of phylogenetic rogue taxa
- Classification of molecular sequence data using Bayesian phylogenetic mixture models
- Efficiently Calculating Evolutionary Tree Measures Using SAT
- Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
- Lie Markov models with purine/pyrimidine symmetry
- Phase transition in the sample complexity of likelihood-based phylogeny inference
- On the evolution rate in mammalian mitochondrial genomes
- Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
- SpaceMix
- A new molecular evolution model for limited insertion independent of substitution
- On the dispersion index of a Markovian molecular clock
- Counting labeled transitions in continuous-time Markov models of evolution
- Invertibility of the TKF model of sequence evolution
- An extended model for phylogenetic maximum likelihood based on discrete morphological characters
- Probabilistic models in cluster analysis
- Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding
- Does random tree puzzle produce Yule-Harding trees in the many-taxon limit?
- Mathematical models to reconstruct phylogenetic trees under the minimum evolution criterion
- A Bayesian approach to modelling reticulation events with application to the ribosomal protein gene rps11 of flowering plants
- Omnibus CLTs for Fréchet means and nonparametric inference on non-Euclidean spaces
- Distinguishing phylogenetic networks
- Inference in population genetics using forward and backward, discrete and continuous time processes
- Integer linear programming as a tool for constructing trees from quartet data
- Phylogenetic estimation with partial likelihood tensors
- Phylogenetic inferences from molecular sequences: Review and critique
- Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
- Necessary and sufficient conditions for the existence of certain quadratic invariants under a phylogenetic tree
- Minimum tree cost quartet puzzling
- Approximating likelihoods under low but variable rates across sites
- A neutral evolution test derived from a theoretical amino acid substitution model
- Analytic solutions for three taxon ML trees with variable rates across sites
- The Mathematics of Phylogenomics
- Experiments with the site frequency spectrum
- A note on probabilistic models over strings: the linear algebra approach
- Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
- Lie-Markov models derived from finite semigroups
- Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry
- Multiple pattern matching: a Markov chain approach
- Letter to editor: Rate-variation need not defeat phylogenetic inference through pairwise sequence comparisons
- Phylogenetic distances for neighbour dependent substitution processes
- A phase transition for a random cluster model on phylogenetic trees.
- Generation of the exact distribution and simulation of matched nucleotide sequences on a phylogenetic tree
- Testing neutrality at copy-number-variable loci under the finite-allele and finite-site models
- Identifiability and reconstructibility of species phylogenies under a modified coalescent
- Markov Bridges, Bisection and Variance Reduction
- Demographic inference under the coalescent in a spatial continuum
- A stochastic evolution model for residue insertion-deletion independent from substitution
- Optimal designs for order-of-addition experiments
- A universal scaling law determines time reversibility and steady state of substitutions under selection
- Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees
- The rise of statistical phylogenetics
- An evolution model for sequence length based on residue insertion-deletion independent of substitution: an application to the GC content in bacterial genomes
- Unique reconstruction of tree-like phylogenetic networks from distances between leaves
- Similar States in Continuous-Time Markov Chains
- Reconstruction of large phylogenetic trees: a parallel approach
- An approximate stationary solution for multi-allele neutral diffusion with low mutation rates
- Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
- Using the tangle: A consistent construction of phylogenetic distance matrices for quartets
- A new quartet approach for reconstructing phylogenetic trees: Quartet joining method
- A branch-price-and-cut algorithm for the minimum evolution problem
- Some statistical methods for phylogenetic trees with application to HIV disease
- Why neighbor-joining works
- Modeling nucleotide evolution: A heterogeneous rate analysis
- Distance measures in terms of substitution processes
- Phylogenetic analysis of nucleotide sequences: An algebraic approach
- What can and what cannot be inferred from pairwise sequence comparisons?
- Regexpcount
- Identifiability of a coalescent-based population tree model
- PAxML
- MrBayes
- PHYLIP
- RAxML
- PAUP*
- BIONJ
- BEAST
- MODELTEST
- Seq-Gen
- NAG4M2
- MEGA
- Mesquite
- Gaphyl
- CompLearn
- PAML
- PhyML
- BEAUti
- GPUTeraSort
- SplitsTree
- rSPR
- Phyloquart
- Bali-phy
- IQ-TREE
- NetNUMPAC
- ACEMD
This page was built for software: fastDNAml
