Testing neutrality at copy-number-variable loci under the finite-allele and finite-site models

DOI10.1016/J.TPB.2016.07.002MaRDI QIDQ2011527zbMATH OpenOpenAlexWikidataFDO

Authors Xin-Sheng Hu, Yang Hu, Xiaoyang Chen

Publication date 4 August 2017

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2016.07.002

zbMATH Keywords

allele frequency spectrumchromosomal evolutioncopy-number variationfinite-allele modelfinite-site model

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

Recommendations

• Demography-adjusted tests of neutrality based on genome-wide SNP data
• An extended Tajima's D neutrality test incorporating SNP calling and imputation uncertainties
• Testing associations of copy number variations in genome-wide association studies
• Using GWAS data to identify copy number variants contributing to common complex diseases
• The screening and ranking algorithm to detect DNA copy number variations

Cites work

• scientific article; zbMATH DE number 3126073 (Why is no real title available?)
• scientific article; zbMATH DE number 3162000 (Why is no real title available?)
• scientific article; zbMATH DE number 3567782 (Why is no real title available?)
• scientific article; zbMATH DE number 236854 (Why is no real title available?)
• On the number of segregating sites in genetical models without recombination
• Statistical properties of segregating sites
• THE ESTIMATION OF GENE FREQUENCIES IN A RANDOM-MATING POPULATION
• The sampling theory of selectively neutral alleles

Cited in

(2)

• An extended Tajima's D neutrality test incorporating SNP calling and imputation uncertainties
• Demography-adjusted tests of neutrality based on genome-wide SNP data

Describes a project that uses

Uses Software

• fastDNAml

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