Statistical properties of segregating sites
From MaRDI portal
Publication:1903089
DOI10.1006/tpbi.1995.1025zbMath0854.92014OpenAlexW2013753628WikidataQ34289006 ScholiaQ34289006MaRDI QIDQ1903089
Publication date: 19 January 1997
Published in: Theoretical Population Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1006/tpbi.1995.1025
DNA sequencesWright-Fisher modelmeanscovariancesnucleotidesinfinite-sites modelvariancessegregating sitesclassifications of mutationsDNA polymorphismsfrequency of mutuations
Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10)
Related Items
The site-frequency spectrum associated with \(\varXi\)-coalescents ⋮ The non-equilibrium allele frequency spectrum in a Poisson random field framework ⋮ The Wright-Fisher site frequency spectrum as a perturbation of the coalescent's ⋮ A compendium of covariances and correlation coefficients of coalescent tree properties ⋮ Approximate Sampling Formulae for General Finite-Alleles Models of Mutation ⋮ Mutational pattern of a sample from a critical branching population ⋮ A note on distributions of times to coalescence, under time-dependent population size ⋮ A simple method for computing exact probabilities of mutation numbers ⋮ Variances and covariances of linear summary statistics of segregating sites ⋮ Measuring the external branches of a Kingman tree: a discrete approach ⋮ Testing for population decline using maximal linkage disequilibrium blocks ⋮ Multi-locus data distinguishes between population growth and multiple merger coalescents ⋮ The number of candidate variants in exome sequencing for Mendelian disease under no genetic heterogeneity ⋮ Site Frequency Spectrum of the Bolthausen-Sznitman Coalescent ⋮ The neutral frequency spectrum of linked sites ⋮ Fifty years of theoretical population biology ⋮ Developments in coalescent theory from single loci to chromosomes ⋮ Summary statistics of neutral mutations in longitudinal DNA samples ⋮ A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms ⋮ Site frequency spectra from genomic SNP surveys ⋮ The frequency spectrum of a mutation, and its age, in a general diffusion model ⋮ The site-frequency spectrum of linked sites ⋮ The diversity of a distributed genome in bacterial populations ⋮ Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory ⋮ Statistical inference for the evolutionary history of cancer genomes ⋮ The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele ⋮ Descartes' rule of signs and the identifiability of population demographic models from genomic variation data ⋮ Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory ⋮ Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population ⋮ Variance in estimated pairwise genetic distance under high versus low coverage sequencing: the contribution of linkage disequilibrium ⋮ The third moments of the site frequency spectrum ⋮ The total external length of the evolving Kingman coalescent ⋮ An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations ⋮ The joint allele frequency spectrum of multiple populations: a coalescent theory approach ⋮ Testing neutrality at copy-number-variable loci under the finite-allele and finite-site models ⋮ Exact coalescent for the Wright-Fisher model ⋮ An efficient algorithm for generating the internal branches of a Kingman coalescent ⋮ The site frequency spectrum of dispensable genes ⋮ A generalized Watterson estimator for next-generation sequencing: from trios to autopolyploids ⋮ Demography-adjusted tests of neutrality based on genome-wide SNP data ⋮ Probability of a segregating pattern in a sample of DNA sequences ⋮ Multivariate phase-type theory for the site frequency spectrum ⋮ Robust model selection between population growth and multiple merger coalescents ⋮ Inductive determination of allele frequency spectrum probabilities in structured populations ⋮ Coalescing into the 21st century: An overview and prospects of coalescent theory ⋮ Finding the best resolution for the Kingman-Tajima coalescent: theory and applications ⋮ The internal branch lengths of the Kingman coalescent
