The diversity of a distributed genome in bacterial populations

DOI10.1214/09-AAP657zbMath1196.92029arXiv0907.2572MaRDI QIDQ1958491

Franz Baumdicker, Peter Pfaffelhuber, W. R. Hess

Publication date: 4 October 2010

Published in: The Annals of Applied Probability (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0907.2572

zbMATH Keywords

infinitely many sites model; Kingman's coalescent; gene content; infinitely many genes model

Mathematics Subject Classification ID

92D15: Problems related to evolution

60K35: Interacting random processes; statistical mechanics type models; percolation theory

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92D10: Genetics and epigenetics

60J70: Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.)

Uses Software

• GeneTRACE

Cites Work

• A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms
• Non-equilibrium theory of the allele frequency spectrum
• Degenerate diffusions arising from gene duplication models
• The coalescent
• Mathematical population genetics. I: Theoretical introduction.
• A classification of coalescent processes for haploid exchangeable population models
• Statistical properties of segregating sites
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• Probability Models for DNA Sequence Evolution
• Diffusion models in population genetics
• The Distribution of Gene Frequencies Under Irreversible Mutation