The independent loss model with ordered insertions for the evolution of CRISPR spacers

DOI10.1016/J.TPB.2017.11.001zbMath1397.92482arXiv1703.00220OpenAlexW2769688113WikidataQ47415318 ScholiaQ47415318MaRDI QIDQ1746135

A. M. I. Huebner, Franz Baumdicker, Peter Pfaffelhuber

Publication date: 24 April 2018

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1703.00220

zbMATH Keywords

estimationloss rateCRISPRevolutionary modelgain rate

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70)

Uses Software

• BoxPercentilePlot
• PILER

Cites Work

• Markov chains indexed by trees
• The diversity of a distributed genome in bacterial populations

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