Robust model selection between population growth and multiple merger coalescents

DOI10.1016/j.mbs.2019.03.004zbMath1425.92141arXiv1806.06746OpenAlexW2808140094WikidataQ92240396 ScholiaQ92240396MaRDI QIDQ2328381

Jere Koskela, Maite Wilke-Berenguer

Publication date: 10 October 2019

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1806.06746

zbMATH Keywords

model selectionrecombinationpopulation growthnatural selectionintractable likelihoodmultiple merger coalescent

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Hypothesis testing in multivariate analysis (62H15) Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (3)

The impact of genetic diversity statistics on model selection between coalescents ⋮ Site Frequency Spectrum of the Bolthausen-Sznitman Coalescent ⋮ Cannings models, population size changes and multiple-merger coalescents

Uses Software

• pyuvdata

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Importance sampling for Lambda-coalescents in the infinitely many sites model
• The common ancestor type distribution of a \(\Lambda\)-Wright-Fisher process with selection and mutation
• A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms
• Structured coalescent processes from a modified Moran model with large offspring numbers
• Analysis of DNA sequence variation within marine species using Beta-coalescents
• Ancestral processes for non-neutral models of complex diseases
• The spatial \(\Lambda\)-coalescent
• The coalescent
• On the number of segregating sites in genetical models without recombination
• Ancestral processes with selection
• Perfect simulation from population genetic models with selection.
• Coalescents with multiple collisions
• Genealogical processes for Fleming-Viot models with selection and recombination
• Coalescents with simultaneous multiple collisions
• Multi-locus data distinguishes between population growth and multiple merger coalescents
• The coalescent in population models with time-inhomogeneous environment.
• Particle representations for measure-valued population models
• Properties of a neutral allele model with intragenic recombination
• A classification of coalescent processes for haploid exchangeable population models
• Coalescent patterns in diploid exchangeable population models
• Statistical properties of segregating sites
• A coalescent model for the effect of advantageous mutations on the genealogy of a population
• Coalescent processes obtained from supercritical Galton-Watson processes.
• A convergence theorem for markov chains arising in population genetics and the coalescent with selfing
• Plug-in bandwidth matrices for bivariate kernel density estimation
• The general coalescent with asynchronous mergers of ancestral lines

This page was built for publication: Robust model selection between population growth and multiple merger coalescents