Importance sampling for Lambda-coalescents in the infinitely many sites model

DOI10.1016/j.tpb.2011.01.005zbMath1338.92073arXiv1105.1836OpenAlexW2063140065WikidataQ42173618 ScholiaQ42173618MaRDI QIDQ299323

Jochen Blath, Matthias Birkner, Matthias Steinrücken

Publication date: 22 June 2016

Published in: Theoretical Population Biology, Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1105.1836

zbMATH Keywords

importance samplingpopulation geneticsFleming-Viot processlikelihood estimationMonte-Carlo methodinfinitely many sites modelLambda-coalescentmultiple collisionslikelihood-based inference\(\varLambda \)-coalescentinfinitely-many-sitesmodel

Mathematics Subject Classification ID

Related Items (22)

The site-frequency spectrum associated with \(\varXi\)-coalescents ⋮ Importance sampling for lambda-coalescents in the infinitely many sites model ⋮ Estimation of parameters in large offspring number models and ratios of coalescence times ⋮ Importance sampling for Lambda-coalescents in the infinitely many sites model ⋮ The collision spectrum of \(\Lambda\)-coalescents ⋮ Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations ⋮ Genealogical properties of subsamples in highly fecund populations ⋮ Multi-locus data distinguishes between population growth and multiple merger coalescents ⋮ Computational Inference Beyond Kingman's Coalescent ⋮ On Mittag-Leffler distributions and related stochastic processes ⋮ Inference and rare event simulation for stopped Markov processes via reverse-time sequential Monte Carlo ⋮ Pareto genealogies arising from a Poisson branching evolution model with selection ⋮ Statistical tools for seed bank detection ⋮ Evolution of highly fecund haploid populations ⋮ Experiments with the site frequency spectrum ⋮ Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents ⋮ Large scale localization of a spatial version of Neveu's branching process ⋮ On the extended Moran model and its relation to coalescents with multiple collisions ⋮ Analysis of DNA sequence variation within marine species using Beta-coalescents ⋮ On spatial coalescents with multiple mergers in two dimensions ⋮ Robust model selection between population growth and multiple merger coalescents ⋮ Finding the best resolution for the Kingman-Tajima coalescent: theory and applications

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