Unrooted genealogical tree probabilities in the infinitely-many-sites model

DOI10.1016/0025-5564(94)00044-ZMaRDI QIDQ1804843zbMATH OpenOpenAlexWikidataFDO

Authors Simon Tavaré, Robert Griffiths

Publication date 17 May 1995

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0025-5564(94)00044-z

zbMATH Keywords

coalescenttree structureancestral labelingapproximants to sampling probabilitiesinfinitely many-sites processmaximum likelihood estimators of the substitution rateMonte Carlo recursionrooted genealogiessamples of DNA sequencessequence variabilityunrooted genealogy

Mathematics Subject Classification ID

Probabilistic methods, stochastic differential equations (65C99) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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Cites work

• scientific article; zbMATH DE number 3817476 (Why is no real title available?)
• Counting genealogical trees
• Efficient algorithms for inferring evolutionary trees
• Estimation of the neutral mutation rate in a finite population from DNA sequence data
• Genealogical-tree probabilities in the infinitely-many-site model
• On the number of segregating sites in genetical models without recombination
• Simulating probability distributions in the coalescent
• The infinitely-many-sites model as a measure-valued diffusion

Cited in

(18)

• On coalescence analysis using genealogy rooted trees
• Probability of a segregating pattern in a sample of DNA sequences
• Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
• Inference from gene trees in a subdivided population
• An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations
• Genealogical-tree probabilities in the infinitely-many-site model
• Ages of mutations on a coalescent tree
• The ages of mutations in gene trees
• Analysis of DNA sequence variation within marine species using Beta-coalescents
• The infinitely-many-sites model as a measure-valued diffusion
• Counting genealogical trees
• Importance sampling for lambda-coalescents in the infinitely many sites model
• Coalescing into the 21st century: An overview and prospects of coalescent theory
• Monte Carlo inference methods in population genetics
• Estimation of parameters in large offspring number models and ratios of coalescence times
• An Efficient Coalescent Model for Heterochronously Sampled Molecular Data
• Alternatives to the Wright-Fisher model: the robustness of mitochondrial Eve dating
• Motif Yggdrasil: Sampling from a Tree Mixture Model

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