A new molecular evolution model for limited insertion independent of substitution

DOI10.1016/J.MBS.2013.06.001MaRDI QIDQ2437004zbMATH OpenOpenAlexWikidataFDO

Authors Sophie Lèbre, Christian J. Michel

Publication date 27 February 2014

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2013.06.001

zbMATH Keywords

evolution modelsGC contentlimited insertionsequence contentsequence lengthsubstitution

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• A stochastic evolution model for residue insertion-deletion independent from substitution
• An evolution model for sequence length based on residue insertion-deletion independent of substitution: an application to the GC content in bacterial genomes
• An Improved Model for Statistical Alignment
• Algorithm for statistical alignment of two sequences derived from a Poisson sequence length distribution
• A new stochastic model of microsatellite evolution

Cites work

• A generalization of substitution evolution models of nucleotides to genetic motifs
• A stochastic evolution model for residue insertion-deletion independent from substitution
• An analytical model of gene evolution with 9 mutation parameters: An application to the amino acids coded by the common circular code
• An evolution model for sequence length based on residue insertion-deletion independent of substitution: an application to the GC content in bacterial genomes
• Analytical expression of the purine-pyrimidine codon probability after and before random mutations
• Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns
• Estimation of evolutionary distances between homologous nucleotide sequences.

Cited in

(5)

• Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
• A stochastic evolution model for residue insertion-deletion independent from substitution
• The independent loss model with ordered insertions for the evolution of CRISPR spacers
• An evolution model for sequence length based on residue insertion-deletion independent of substitution: an application to the GC content in bacterial genomes
• Fundamental asymmetry of insertions and deletions in genomes size evolution

Describes a project that uses

Uses Software

• fastDNAml
• SEGM

This page was built for publication: A new molecular evolution model for limited insertion independent of substitution

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2437004)