A generalization of substitution evolution models of nucleotides to genetic motifs

DOI10.1016/J.JTBI.2011.07.009MaRDI QIDQ1786445zbMATH OpenOpenAlexWikidataFDO

Authors Emmanuel Benard, Christian J. Michel

Publication date 24 September 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2011.07.009

zbMATH Keywords

analytical solutionsgenetic motifsresearch softwarestochastic modelssubstitution models

Mathematics Subject Classification ID

Applications of stochastic analysis (to PDEs, etc.) (60H30) Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

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Cites work

• A stochastic evolution model for residue insertion-deletion independent from substitution
• An analytical model of gene evolution with 9 mutation parameters: An application to the amino acids coded by the common circular code
• An Asymptotic Analysis of a Queueing System with Markov-Modulated Arrivals
• Analytical expression of the purine-pyrimidine codon probability after and before random mutations
• Codon phylogenetic distance
• Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns
• Detecting the Dependent Evolution of Biosequences
• Estimation of evolutionary distances between homologous nucleotide sequences.
• Evolution probabilities and phylogenetic distance of dinucleotides
• Hadamard phylogenetic methods and the \(n\)-taxon process
• How to establish universal block-matrix factorizations
• scientific article; zbMATH DE number 2166998 (Why is no real title available?)

Cited in

(9)

• Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
• The evolution of stochastic regular motifs for protein sequences
• Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns
• A stochastic evolution model for residue insertion-deletion independent from substitution
• Modeling nucleotide evolution: A heterogeneous rate analysis
• A new molecular evolution model for limited insertion independent of substitution
• Solvable models of neighbor-dependent substitution processes
• scientific article; zbMATH DE number 4193512 (Why is no real title available?)
• scientific article; zbMATH DE number 6439128 (Why is no real title available?)

Describes a project that uses

Uses Software

• SEGM

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