Codon phylogenetic distance

DOI10.1016/J.COMPBIOLCHEM.2006.11.001MaRDI QIDQ2373272zbMATH OpenOpenAlexWikidataFDO

Authors Christian J. Michel

Publication date 17 July 2007

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.11.001

zbMATH Keywords

Analytical modelCircular codeCodonEvolution modelGeneMutation matrixStochastic modelTrinucleotide

Mathematics Subject Classification ID

Stochastic matrices (15B51) Biochemistry, molecular biology (92C40) Problems related to evolution (92D15)

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Cites work

• An analytical model of gene evolution with 9 mutation parameters: An application to the amino acids coded by the common circular code
• An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
• An evolutionary analytical model of a complementary circular code simulating the protein coding genes, the 5' and 3' regions
• Circular codes and synchronization
• Estimation of evolutionary distances between homologous nucleotide sequences.
• scientific article; zbMATH DE number 1988973 (Why is no real title available?)

Cited in

(10)

• Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns
• Codon and amino-acid distribution in DNA
• A generalization of substitution evolution models of nucleotides to genetic motifs
• Statistics of trinucleotides in coding sequences and evolution
• An analytical model of gene evolution with 9 mutation parameters: An application to the amino acids coded by the common circular code
• An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
• A stochastic gene evolution model with time dependent mutations
• Asynchronous Distance between Homologous DNA Sequences
• scientific article; zbMATH DE number 756195 (Why is no real title available?)
• CODON DISTRIBUTIONS IN DNA SEQUENCE OF ESCHERICHIA COLI

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