Analytic solutions for three taxon ML trees with variable rates across sites
DOI10.1016/J.DAM.2005.05.043zbMATH Open1109.92029OpenAlexW2003231666MaRDI QIDQ876473FDOQ876473
David Penny, Benny Chor, M. D. Hendy
Publication date: 18 April 2007
Published in: Discrete Applied Mathematics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.dam.2005.05.043
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maximum likelihoodphylogenetic treesHadamard conjugation2-state modelmolecular clockunequal rates across sites
Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Trees (05C05)
Cites Work
- Reconstructing the shape of a tree from observed dissimilarity data
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- A discrete Fourier analysis for evolutionary trees.
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- A few logs suffice to build (almost) all trees (I)
- Spectral analysis of phylogenetic data
- Provably fast and accurate recovery of evolutionary trees through harmonic greedy triplets
Cited In (10)
- Kernel and fast algorithm for dense triplet inconsistency
- Phylogenetic trees via Hamming distance decomposition tests
- New results on optimizing rooted triplets consistency
- Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites
- Maximum likelihood estimation and natural pairwise estimating equations are identical for three sequences and a symmetric 2-state substitution model
- The approximability of maximum rooted triplets consistency with fan triplets and forbidden triplets
- Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
- The Approximability of Maximum Rooted Triplets Consistency with Fan Triplets and Forbidden Triplets
- Building a small and informative phylogenetic supertree
- Analytic solutions of maximum likelihood on forks of four taxa
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