Analytic solutions for three taxon ML trees with variable rates across sites

DOI10.1016/j.dam.2005.05.043zbMath1109.92029OpenAlexW2003231666MaRDI QIDQ876473

David Penny, Benny Chor, Michael D. Hendy

Publication date: 18 April 2007

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2005.05.043

zbMATH Keywords

maximum likelihoodmolecular clockphylogenetic treesHadamard conjugation2-state modelunequal rates across sites

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Trees (05C05) Problems related to evolution (92D15)

Related Items (6)

Phylogenetic trees via Hamming distance decomposition tests ⋮ The Approximability of Maximum Rooted Triplets Consistency with Fan Triplets and Forbidden Triplets ⋮ Kernel and fast algorithm for dense triplet inconsistency ⋮ Building a small and informative phylogenetic supertree ⋮ The approximability of maximum rooted triplets consistency with fan triplets and forbidden triplets ⋮ New results on optimizing rooted triplets consistency

Uses Software

• fastDNAml

Cites Work

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• Reconstructing the shape of a tree from observed dissimilarity data
• Spectral analysis of phylogenetic data
• Provably Fast and Accurate Recovery of Evolutionary Trees through Harmonic Greedy Triplets
• A few logs suffice to build (almost) all trees (I)
• A discrete Fourier analysis for evolutionary trees.

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