A discrete Fourier analysis for evolutionary trees.

DOI10.1073/PNAS.91.8.3339MaRDI QIDQ4292177zbMATH OpenOpenAlexWikidataFDO

Authors David Penny, M. D. Hendy, Mike Steel

Publication date 11 July 1994

Published in Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.91.8.3339

zbMATH Keywords

phylogenetic treeparsimonyspectral analysisevolutionary treehigher-order interactionscompatibility analysisexpected frequenciesCavender/Farris modelclosest tree algorithmdiscrete Fourier transformationsHadamard conjugationsinvertible relationshipsKimura's 3ST modelleast-squares selection proceduremultiple substitutionsnucleotide patternsprimate hemoglobin sequencesunique best-fit phylogenetic tree

Mathematics Subject Classification ID

Problems related to evolution (92D15) Fourier and Fourier-Stieltjes transforms and other transforms of Fourier type (42A38) Harmonic analysis in one variable (42A99)

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• Spectral analysis of phylogenetic data
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Cited in

(26)

• Dimensions of group-based phylogenetic mixtures
• Spectral analysis of phylogenetic data
• Hadamard conjugation: an analytic tool for phylogenetics
• Analytic solutions for three taxon ML trees with variable rates across sites
• scientific article; zbMATH DE number 6277703 (Why is no real title available?)
• Lie-Markov models derived from finite semigroups
• Adaptation of the closest tree method for a two state quartet to Jukes-Cantor tripod trees
• Bootstrapping phylogenetic trees: theory and methods
• Reconstructing phylogenies from nucleotide pattern probabilities: A survey and some new results
• Towards optimal distance functions for stochastic substitution models
• Do tree split probabilities determine the branch lengths?
• Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics
• Some uses of the Farris transform in mathematics and phylogenetics -- A review
• Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
• Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
• Spectral analysis and a closest tree method for genetic sequences
• A novel algebraic approach to time-reversible evolutionary models
• Statistics for phylogenetic trees
• Phylogenetic analysis of DNA sequences based on fractional Fourier transform
• Preface. Algebraic methods in phylogenetics
• Fourier calculus on evolutionary trees
• MULTIPLE COMPARISONS OF LOG-LIKELIHOODS AND COMBINING NONNESTED MODELS WITH APPLICATIONS TO PHYLOGENETIC TREE SELECTION
• Dimensional reduction for the general Markov model on phylogenetic trees
• Cases in which ancestral maximum likelihood will be confusingly misleading
• Analytic solutions of maximum likelihood on forks of four taxa
• Evaluation of the relative performance of the subflattenings method for phylogenetic inference

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