A discrete Fourier analysis for evolutionary trees.
DOI10.1073/PNAS.91.8.3339zbMATH Open0791.92017OpenAlexW2140170649WikidataQ35170204 ScholiaQ35170204MaRDI QIDQ4292177FDOQ4292177
Authors: David Penny, M. D. Hendy, Mike Steel 
Publication date: 11 July 1994
Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1073/pnas.91.8.3339
Recommendations
phylogenetic treeparsimonyspectral analysisevolutionary treehigher-order interactionscompatibility analysisexpected frequenciesCavender/Farris modelclosest tree algorithmdiscrete Fourier transformationsHadamard conjugationsinvertible relationshipsKimura's 3ST modelleast-squares selection proceduremultiple substitutionsnucleotide patternsprimate hemoglobin sequencesunique best-fit phylogenetic tree
Problems related to evolution (92D15) Fourier and Fourier-Stieltjes transforms and other transforms of Fourier type (42A38) Harmonic analysis in one variable (42A99)
Cited In (26)
- Hadamard conjugation: an analytic tool for phylogenetics
- Dimensions of group-based phylogenetic mixtures
- Title not available (Why is that?)
- Spectral analysis of phylogenetic data
- Analytic solutions for three taxon ML trees with variable rates across sites
- Lie-Markov models derived from finite semigroups
- Adaptation of the closest tree method for a two state quartet to Jukes-Cantor tripod trees
- Bootstrapping phylogenetic trees: theory and methods
- Reconstructing phylogenies from nucleotide pattern probabilities: A survey and some new results
- Towards optimal distance functions for stochastic substitution models
- Do tree split probabilities determine the branch lengths?
- Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics
- Some uses of the Farris transform in mathematics and phylogenetics -- A review
- Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
- Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
- A novel algebraic approach to time-reversible evolutionary models
- Spectral analysis and a closest tree method for genetic sequences
- Phylogenetic analysis of DNA sequences based on fractional Fourier transform
- Statistics for phylogenetic trees
- Preface. Algebraic methods in phylogenetics
- Fourier calculus on evolutionary trees
- MULTIPLE COMPARISONS OF LOG-LIKELIHOODS AND COMBINING NONNESTED MODELS WITH APPLICATIONS TO PHYLOGENETIC TREE SELECTION
- Dimensional reduction for the general Markov model on phylogenetic trees
- Cases in which ancestral maximum likelihood will be confusingly misleading
- Analytic solutions of maximum likelihood on forks of four taxa
- Evaluation of the relative performance of the subflattenings method for phylogenetic inference
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