Phylogenetic analysis of DNA sequences based on fractional Fourier transform

DOI10.1016/J.PHYSA.2018.06.044MaRDI QIDQ2153226zbMATH OpenOpenAlexWikidataFDO

Authors Kun Qian, Yihui Luan

Publication date 1 July 2022

Published in Physica A (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.physa.2018.06.044

zbMATH Keywords

discrete fractional Fourier transformphylogenetic treepower spectrum momentssequence comparison

Mathematics Subject Classification ID

Statistical mechanics, structure of matter (82-XX)

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Cites work

• A measure of the similarity of sets of sequences not requiring sequence alignment.
• A new graphical coding of DNA sequence and its similarity calculation
• A new method to cluster DNA sequences using Fourier power spectrum
• A novel representation of DNA sequence based on CMI coding
• C-curve: a novel 3D graphical representation of DNA sequence based on codons
• Comparison of biosequences
• Comparison of phylogenetic trees
• DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
• scientific article; zbMATH DE number 3943611 (Why is no real title available?)
• Identification of protein coding regions in the eukaryotic DNA sequences based on marple algorithm and wavelet packets transform
• Phylogenetic analysis of DNA sequences based on \(k\)-word and rough set theory
• Similarity analysis of DNA sequences based on the EMD method
• Weighted measures based on maximizing deviation for alignment-free sequence comparison

Cited in

(8)

• Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
• Whole-genome phylogeny of giant viruses by Fourier transform
• Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition
• A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering
• A new method to cluster DNA sequences using Fourier power spectrum
• scientific article; zbMATH DE number 2369589 (Why is no real title available?)
• Phylogenetic analysis of DNA sequences with a novel characteristic vector
• An improved model for whole genome phylogenetic analysis by Fourier transform

Describes a project that uses

Uses Software

• Clustal X
• PAML

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