Phylogenetic analysis of DNA sequences based on fractional Fourier transform

DOI10.1016/J.PHYSA.2018.06.044OpenAlexW2808872997WikidataQ129650901 ScholiaQ129650901MaRDI QIDQ2153226FDOQ2153226

Authors: Kun Qian, Yihui Luan 

Publication date: 1 July 2022

Published in: Physica A (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.physa.2018.06.044

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zbMATH Keywords

phylogenetic treesequence comparisondiscrete fractional Fourier transformpower spectrum moments

Mathematics Subject Classification ID

Statistical mechanics, structure of matter (82-XX)

Cites Work

• Comparison of phylogenetic trees
• Title not available (Why is that?)
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• A new method to cluster DNA sequences using Fourier power spectrum
• Weighted measures based on maximizing deviation for alignment-free sequence comparison
• DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
• A novel representation of DNA sequence based on CMI coding
• C-curve: a novel 3D graphical representation of DNA sequence based on codons
• Similarity analysis of DNA sequences based on the EMD method
• Comparison of biosequences
• A new graphical coding of DNA sequence and its similarity calculation
• Phylogenetic analysis of DNA sequences based on \(k\)-word and rough set theory
• Identification of protein coding regions in the eukaryotic DNA sequences based on marple algorithm and wavelet packets transform

Cited In (8)

• Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition
• A new method to cluster DNA sequences using Fourier power spectrum
• An improved model for whole genome phylogenetic analysis by Fourier transform
• Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
• Whole-genome phylogeny of giant viruses by Fourier transform
• Title not available (Why is that?)
• A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering
• Phylogenetic analysis of DNA sequences with a novel characteristic vector

Uses Software

• PAML
• Clustal X

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