Comparison of biosequences

DOI10.1016/0196-8858(81)90046-4MaRDI QIDQ1167075zbMATH OpenOpenAlexFDO

Authors Temple F. Smith, Michael S. Waterman

Publication date 1981

Published in Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0196-8858(81)90046-4

zbMATH Keywords

new algorithmcomparison of biosequencesdistance measure of Sellershomology measure of Needleman and Wunsch

Mathematics Subject Classification ID

General biology and biomathematics (92B05) Physiological, cellular and medical topics (92Cxx)

Cites work

• On the Theory and Computation of Evolutionary Distances
• Some biological sequence metrics
• The theory and computation of evolutionary distances: Pattern recognition

Cited in

(19)

• General methods of sequence comparison
• Sequence retrieval from genomic databases
• Application of max-plus algebra to biological sequence comparisons
• On the similarity metric and the distance metric
• Sequence graph transform (SGT): a feature embedding function for sequence data mining
• Protein classification by stochastic modeling and optimal filtering of amino-acid sequences
• Computing similarity between RNA structures
• A new algorithm for computing similarity between RNA structures
• An analytic study of the phase transition line in local sequence alignment with gaps
• Phylogenetic analysis of DNA sequences based on fractional Fourier transform
• Longest increasing subsequences in windows based on canonical antichain partition
• Motif based sequence classification
• Compositional properties of alignments
• Pattern-constrained multiple polypeptide sequence alignment
• \textsc{AStarix}: fast and optimal sequence-to-graph alignment
• Efficient sequence alignment with side-constraints by cluster tree elimination
• A nonlinear measure of subalignment similarity and its significance levels
• Locally optimal subalignments using nonlinear similarity functions
• Protein space: a natural method for realizing the nature of protein universe

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