On the Theory and Computation of Evolutionary Distances
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Publication:4042877
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(37)- General methods of sequence comparison
- Global and local sequence alignment with a bounded number of gaps
- Extending alignments with k-mismatches and -gaps
- The undecidability of the unrestricted modified edit distance
- Application of max-plus algebra to biological sequence comparisons
- Dynamic programming algorithms for picture comparison
- Novel evolutionary models and applications to sequence alignment problems
- A survey of multiple sequence comparison methods
- Optimal sequence alignment using affine gap costs
- String editing under a combination of constraints
- Quantifying Statistical Interdependence by Message Passing on Graphs—Part I: One-Dimensional Point Processes
- Use of information theory to study genome sequences
- A Fast ℒp Spike Alignment Metric
- A distance measure based on binary character data and its application to phylogeny reconstruction
- Improvement of Pairwise Alignment by an Information Measure
- Consistency of optimal sequence alignments
- Minimum message length encoding and the comparison of macromolecules
- Optimal sequence alignment allowing for long gaps
- A metric normalization of tree edit distance
- A bit-string longest-common-subsequence algorithm
- Volume formula and growth rates of the balls of strings under the edit distances
- The prediction of a protein and nucleic acid structure: Problems and prospects
- Amino acid sequences and DP matching: A new method for alignment
- Probabilistic ancestral sequences and multiple alignments
- Constrained many-to-one string editing with memory
- Algorithms for computing evolutionary similarity measures with length independent gap penalties
- Line geometries for sequence comparisons
- Identifying periodic occurrences of a template with applications to protein structure
- Matrices inducing generalized metric on sequences
- RNA secondary structure: a complete mathematical analysis
- Nested wreath groups and their applications to phylogeny in biology and Cayley trees in chemistry and physics
- Pattern recognition in genetic sequences by mismatch density
- Comparison of biosequences
- Some biological sequence metrics
- A nonlinear measure of subalignment similarity and its significance levels
- Locally optimal subalignments using nonlinear similarity functions
- Detecting life signatures with RNA sequence similarity measures
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