Pattern-constrained multiple polypeptide sequence alignment

DOI10.1016/J.COMPBIOLCHEM.2005.06.002MaRDI QIDQ2500332zbMATH OpenOpenAlexWikidataFDO

Authors Zhihua Du, Feng Lin

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2005.06.002

zbMATH Keywords

Multiple sequence alignmentRegular expressionStructural informationDomain knowledgeProsite databank

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Cites work

• A survey of multiple sequence comparison methods
• Comparison of biosequences
• Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
• The Multiple Sequence Alignment Problem in Biology

Cited in

(3)

• Establishing a statistic model for recognition of steroid hormone response elements
• Statistical Methods for Identifying Conserved Residues in Multiple Sequence Alignment
• Multiple protein sequence alignment using double-dynamic programming

Describes a project that uses

Uses Software

• Pfam
• BLAST
• PSI-BLAST
• MUSCLE
• ClustalW
• MAFFT

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