MUSCLE
From MaRDI portal
Cited in
(only showing first 100 items - show all)- A Dirichlet process mixture of hidden Markov models for protein structure prediction
- Optimal implementations of UPGMA and other common clustering algorithms
- Global alignment of molecular sequences via ancestral state reconstruction
- Protein-protein interactions can be predicted using coiled coil co-evolution patterns
- Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
- A neutral evolution test derived from a theoretical amino acid substitution model
- Identifiability of phylogenetic parameters from k-mer data under the coalescent
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- A novel clustering method via nucleotide-based Fourier power spectrum analysis
- Modeling the distribution of distance data in Euclidean space
- Generalizing rate heterogeneity across sites in statistical phylogenetics
- \textit{In silico} analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific \({\delta}\)- and \({\varepsilon}\)-GSTs and mammalian specific \({\mu}\)-GSTs in \textit{Ixodes scapularis} (Acari: Ixodidae)
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- Exact Multiple Sequence Alignment by Synchronized Decision Diagrams
- Data mining techniques for the life sciences
- Low complexity regions (LCRs) contribute to the hypervariability of the HIV-1 gp120 protein
- Multiobjective artificial fish swarm algorithm for multiple sequence alignment
- A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
- Cross-species network and transcript transfer
- Geometric combinatorics and computational molecular biology: branching polytopes for RNA sequences
- Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
- A Lagrangian relaxation approach for the multiple sequence alignment problem
- ReCombinatorics
- BioJava
- fastDNAml
- Biopython
- MEGA4
- MrBayes
- PHYLIP
- RAxML
- BIONJ
- BEAST
- MAFFT
- MODELTEST
- Balibase
- CAP3
- Soap
- MEGA
- FASTA
- bioperl
- HMMER
- AUGUSTUS
- EMBOSS
- PAML
- PSIPRED
- 3DCoffee
- ClustalW
- CloudBurst
- DIALIGN
- MSAProbs
- ProbCons
- BEAUti
- CLUSTAL
- DIALIGN-TX
- Secator
- SURFNET
- MUMMALS
- Kalign
- BLAST
- LAGAN
- QSCORE
- LTR_FINDER
- Repseek
- GAGE
- MTRAP
- Wisconsin
- T-coffee
- Varun
- Biostrings
- Clustal X
- tracker2
- MEGA6
- Bali-phy
- Bcepred
- Cd-hit
- HHblits
- Galaxy
- MATRAS
- eggNOG
- PROCHECK
- AVID
- Infernal
- PROMALS3D
- Mugsy
- AutoFACT
- Prodigal
- DAMBE
- FragGeneScan
- bioinformer
- BEDTools
- PartTree
- SABmark
- FIMO
- EasyGene
- PCAP
- Profunc
- MUMMER
- InterProScan
- JBROWSE
- MAKER
This page was built for software: MUSCLE
