MUSCLE
From MaRDI portal
Cited in
(only showing first 100 items - show all)- A Lagrangian relaxation approach for the multiple sequence alignment problem
- Edlib
- ReCombinatorics
- \textit{In silico} analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific \({\delta}\)- and \({\varepsilon}\)-GSTs and mammalian specific \({\mu}\)-GSTs in \textit{Ixodes scapularis} (Acari: Ixodidae)
- Use of image texture analysis to find DNA sequence similarities
- Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study
- Computational analysis in designing T cell epitopes enriched peptides of Ebola glycoprotein exhibiting strong binding interaction with HLA molecules
- In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii}
- A neutral evolution test derived from a theoretical amino acid substitution model
- Identifiability of phylogenetic parameters from k-mer data under the coalescent
- BioJava
- A novel clustering method via nucleotide-based Fourier power spectrum analysis
- A potential in silico antibody-antigen based diagnostic test for precise identification of \textit{Acinetobacter baumannii}
- fastDNAml
- Biopython
- Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
- PHYLIP
- MEGA4
- MrBayes
- RAxML
- Protein-protein interactions can be predicted using coiled coil co-evolution patterns
- BIONJ
- MAFFT
- MODELTEST
- Compositional properties of alignments
- Balibase
- Soap
- CAP3
- Competitive evolution of H1N1 and H3N2 influenza viruses in the United States: a mathematical modeling study
- MEGA
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- FASTA
- HMMER
- bioperl
- PAML
- EMBOSS
- AUGUSTUS
- Discrete wavelet packet transform based discriminant analysis for whole genome sequences
- PSIPRED
- ADLD: a novel graphical representation of protein sequences and its application
- A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
- Optimal implementations of UPGMA and other common clustering algorithms
- Indexing factors with gaps
- MSAProbs
- 3DCoffee
- ProbCons
- DIALIGN
- ClustalW
- CloudBurst
- A time warping approach to multiple sequence alignment
- SURFNET
- Comparison of alignment free string distances for complete genome phylogeny
- BEAST
- BEAUti
- Secator
- CLUSTAL
- DIALIGN-TX
- MSAID: multiple sequence alignment based on a measure of information discrepancy
- Pattern-constrained multiple polypeptide sequence alignment
- QSCORE
- MUMMALS
- Wisconsin
- Repseek
- Varun
- LAGAN
- Kalign
- T-coffee
- LTR_FINDER
- Adaptation of the method of musical composition for solving the multiple sequence alignment problem
- GAGE
- MTRAP
- Low complexity regions (LCRs) contribute to the hypervariability of the HIV-1 gp120 protein
- Biostrings
- tracker2
- Cross-species network and transcript transfer
- Clustal X
- MEGA6
- Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
- Bali-phy
- Bcepred
- MATRAS
- PROCHECK
- Cd-hit
- HHblits
- PROMALS3D
- Galaxy
- Mugsy
- Prodigal
- Infernal
- SPAdes
- eggNOG
- AVID
- SABmark
- PartTree
- FragGeneScan
- PCAP
- AutoFACT
- DAMBE
- Profunc
- bioinformer
This page was built for software: MUSCLE
