Data mining techniques for the life sciences
data miningfunctional analysisRNA-seqprotein structureontology3D protein domain interactionaligned homologous proteinsbacterial genomic data analysisCHIP-Seqconformational disorderconservation of substrate binding residuesCryo-EM density mapsdrug-target interaction predictionefficient amino-acid substitution matrixgenomic databasehigh-throughput assayhomology based annotationlatent regular structuresmacromolecular structuremetabolomics datametagenomeMIntAct projectmolecular interaction databasenon-synonimious variantsplant genomicsplant proteomicsprotein crystalizabilityprotein mutant stabilityprotein residue contactsprotein sequence-based function predictionprotein thermodynamic database
Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Biochemistry, molecular biology (92C40) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to statistics (62-01) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01)
Uses Software
- PlantTFDB
- eggNOG
- ELM
- dbCAN
- antiSMASH
- dissectHMMER
- HPMV
- ANNIE
- FreeContact
- CCMpred
- NNcon
- MetaPSICOV
- PconsFold
- PSICOV
- APOLLO
- CONFOLD
- ncPred
- STITCH
- MIND-BEST
- SPAdes
- VelvetOptimiser
- OMERO
- SnpEff
- Infernal
- ARAGORN
- RNAmmer
- Prodigal
- Prokka
- CISA
- SEQuel
- SSAKE
- Orione
- MetaboLights
- MSEA
- iPath
- Brain
- HPOSim
- GOSemSim
- DOSE
- PhenomeNET
- IntelliGO
- FUNC
- Aber-OWL
- Ontobee
- Galaxy
- XANNpred
- XtalPred
- PROFEAT
- SSpro
- PredPPCrys
- CRYSTALP2
- ParCrys
- VNTRseek
- PROMALS3D
- ANCHOR
- FoldUnfold
- IUPred
- POODLE-I
- PrDOS
- SPINE-D
- ESpritz
- Porter
- RONN
- DISOPRED
- DNdisorder
- StrBioLib
- PROFbval
- PONDR-FIT
- MFDp2
- PreDisorder
- MetaDisorder
- MeDor
- VaZyMolO
- HTSeq
- OpenCyto
- GenePattern
- FUGUE
- ADP_EM
- MOTIF-EM
- BLAT
- HHblits
- SUPERFAMILY
- SFCHECK
- Cd-hit
- OBSTRUCT
- PROCHECK
- PDB_REDO
- MAESTRO
- mCSM
- DUET
- ENCoM
- PoPMuSiC
- AUTO-MUTE
- CUPSAT
- ESyPred3D
- SCOP2
- pKNOT
- PISCES
- DBAli tools
- MATRAS
- NUCPLOT
- LIGPLOT
- ANNOTATOR
- Plotly
- Jmol
- Samtools
- flowCore
- GAGE
- MUSCLE
- SOPRA
- AUGUSTUS
- EMBOSS
- Sweave
- bioperl
- HMMER
- PyMOL
- EMan
- Soap
- MAFFT
- tRNAscan-SE
- rmarkdown
- Biopython
- GlobPlot
- Bioconductor
- STAR
- MIRA
- R
- Mugsy
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