BEAUti
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(38)- Comment on article by Rubio and Steel
- Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
- Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
- Enumeration of binary trees compatible with a perfect phylogeny
- Batch Matrix Exponentiation
- Developments in coalescent theory from single loci to chromosomes
- Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting
- The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
- fastDNAml
- MrBayes
- BEAST
- phytools
- Geneland
- LAMARC
- BEAGLE
- pIQPNNI
- rSPR
- phylodyn
- mvMORPH
- BPEC
- TOPD/FMTS
- DIYABC
- Noisy
- DensiTree
- Partitionfinder
- Tracer
- spr_neighbors
- diversitree
- PCMBase
- SPLITT
- Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
- Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths
- Exact limits of inference in coalescent models
- An adjacent-swap Markov chain on coalescent trees
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Coalescent models derived from birth-death processes
- Uncertainty in Phylogenetic Tree Estimates
- Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
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