MrBayes
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Cited in
(only showing first 100 items - show all)- Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
- PhyloGeoTool
- Pyvolve
- SimPlot++
- EvoVGM
- stableGR
- The Bouncy Particle Sampler: A Non-Reversible Rejection-Free Markov Chain Monte Carlo Method
- Classification of molecular sequence data using Bayesian phylogenetic mixture models
- The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
- ape
- Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
- Split probabilities and species tree inference under the multispecies coalescent model
- Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study
- Estimating trees from filtered data: identifiability of models for morphological phylogenetics
- Sampling-through-time in birth-death trees
- BioJava
- Binary Steiner trees: structural results and an exact solution approach
- The reconstructed evolutionary process with the fossil record
- fastDNAml
- PHENIX
- PHYLIP
- MEGA4
- RAxML
- PAUP*
- GOSim
- SeqinR
- BIONJ
- MAFFT
- pegas
- MODELTEST
- LASER
- Seq-Gen
- phangorn
- Clustal
- LINCS
- Spectronet
- Balibase
- MEGA
- Weighted measures based on maximizing deviation for alignment-free sequence comparison
- AutoDock Vina
- Mesquite
- An extended model for phylogenetic maximum likelihood based on discrete morphological characters
- phytools
- Shortest paths and convex hulls in 2D complexes with non-positive curvature
- Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
- HMMER
- PhyML
- PAML
- Cluster-C
- Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
- Geneland
- Consistency of a phylogenetic tree maximum likelihood estimator
- Approximating geodesic tree distance
- Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- SplitsTree
- BEAGLE
- BEAST
- BEAUti
- pIQPNNI
- GPUTeraSort
- SETTLE
- rSPR
- MUSCLE
- Kalign
- T-coffee
- Genealogical histories in structured populations
- Molecular modeling and molecular dynamics simulations of GPI 14 in \textit{Leishmania major}: insight into the catalytic site for active site directed drug design
- SPRSupertrees
- Information geometry for phylogenetic trees
- rwty
- FASTA3
- A Bayesian approach to modelling reticulation events with application to the ribosomal protein gene rps11 of flowering plants
- PRALINE
- Clustal X
- Bali-phy
- Mugsy
- IQ-TREE
- AVID
- SABmark
- YACOP
- DAMBE
- JBROWSE
- rBiopaxParser
- Protein domain hierarchy Gibbs sampling strategies
- DendroPy
- AWTY
- Consed
- Algorithms in computational molecular biology. Techniques approaches and applications.
- A comparison of ancestral state reconstruction methods for quantitative characters
- Reversible polymorphism-aware phylogenetic models and their application to tree inference
- TOPD/FMTS
- mvMORPH
- kdetrees
- Analysis of phylogenetics and evolution with R
- ASTRAL-II
- PhyloNet
- STRAP
- PatternHunter
- BPEC
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