Sampling-through-time in birth-death trees

DOI10.1016/J.JTBI.2010.09.010MaRDI QIDQ1733035zbMATH OpenOpenAlexWikidataFDO

Authors Tanja Stadler

Publication date 26 March 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2010.09.010

zbMATH Keywords

birth-death processsampling-through-timetree prior

Mathematics Subject Classification ID

Applications of graph theory (05C90) Applications of branching processes (60J85) Problems related to evolution (92D15)

Recommendations

• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
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• The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data
• The generalized time variable reconstructed birth-death process

Cites work

• A critical branching process model for biodiversity
• Asymptotic genealogy of a critical branching process
• Handbook of mathematics. Translated from the Russian. With 1 CD-ROM
• scientific article; zbMATH DE number 3817476 (Why is no real title available?)
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• scientific article; zbMATH DE number 3249395 (Why is no real title available?)
• scientific article; zbMATH DE number 3057657 (Why is no real title available?)
• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• On the Generalized "Birth-and-Death" Process
• The coalescent
• The conditioned reconstructed process

Cited in

(18)

• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
• The generalized time variable reconstructed birth-death process
• Markov genealogy processes
• Statistical challenges in tracking the evolution of SARS-CoV-2
• The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data
• The probability distribution of the reconstructed phylogenetic tree with occurrence data
• Phylogenetic analysis accounting for age-dependent death and sampling with applications to epidemics
• A characterisation of the reconstructed birth-death process through time rescaling
• Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
• Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
• Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2
• Design and analysis of infectious disease studies. Abstracts from the workshop held February 19--25, 2023
• Probability distribution of tree age for the simple birth-death process, with applications to distributions of number of ancestral lineages and divergence times for pairs of taxa in a Yule tree
• Identifiability and inference of phylogenetic birth-death models
• Branch length statistics in phylogenetic trees under constant-rate birth-death dynamics
• Computing tree size under dynamical models of diversification
• Clade size distributions under the coalescent diversification model

Describes a project that uses

Uses Software

• MrBayes
• BEAST

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