Sampling-through-time in birth-death trees

DOI10.1016/j.jtbi.2010.09.010zbMath1410.92080OpenAlexW2007593785WikidataQ34138710 ScholiaQ34138710MaRDI QIDQ1733035

Tanja Stadler

Publication date: 26 March 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2010.09.010

zbMATH Keywords

birth-death processsampling-through-timetree prior

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of graph theory (05C90) Applications of branching processes (60J85)

Related Items (13)

Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models ⋮ Markov genealogy processes ⋮ Phylogenetic analysis accounting for age-dependent death and sampling with applications to epidemics ⋮ Statistical challenges in tracking the evolution of SARS-CoV-2 ⋮ The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes ⋮ Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2 ⋮ Design and analysis of infectious disease studies. Abstracts from the workshop held February 19--25, 2023 ⋮ Probability distribution of tree age for the simple birth-death process, with applications to distributions of number of ancestral lineages and divergence times for pairs of taxa in a Yule tree ⋮ Identifiability and inference of phylogenetic birth-death models ⋮ The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data ⋮ Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies ⋮ The generalized time variable reconstructed birth-death process ⋮ The probability distribution of the reconstructed phylogenetic tree with occurrence data

Uses Software

• MrBayes
• BEAST

Cites Work

• The coalescent
• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• Asymptotic genealogy of a critical branching process
• The conditioned reconstructed process
• A critical branching process model for biodiversity
• On the Generalized "Birth-and-Death" Process
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