A critical branching process model for biodiversity
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Abstract: Motivated as a null model for comparison with data, we study the following model for a phylogenetic tree on extant species. The origin of the clade is a random time in the past, whose (improper) distribution is uniform on . After that origin, the process of extinctions and speciations is a continuous-time critical branching process of constant rate, conditioned on having the prescribed number of species at the present time. We study various mathematical properties of this model as limits: time of origin and of most recent common ancestor; pattern of divergence times within lineage trees; time series of numbers of species; number of extinct species in total, or ancestral to extant species; and "local" structure of the tree itself. We emphasize several mathematical techniques: associating walks with trees, a point process representation of lineage trees, and Brownian limits.
Recommendations
- New analytic results for speciation times in neutral models
- The conditioned reconstructed process
- Asymptotic genealogy of a critical branching process
- Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
- Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
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Cited in
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- The reconstructed tree in the lineage-based model of protracted speciation
- On incomplete sampling under birth-death models and connections to the sampling-based coalescent
- Time to a single hybridization event in a group of species with unknown ancestral history
- Sampling-through-time in birth-death trees
- Asymptotic genealogy of a critical branching process
- The generalized time variable reconstructed birth-death process
- The conditioned reconstructed process
- The coalescent point process of branching trees
- Branching processes seen from their extinction time via path decompositions of reflected Lévy processes
- A conversation with David J. Aldous
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- Some properties of stationary continuous state branching processes
- Quantifying the effects of anagenetic and cladogenetic evolution
- Coalescences in continuous-state branching processes
- Reflections on the extinction-explosion dichotomy
- The height of the latest common ancestor of two randomly chosen leaves from a (sub-)critical Galton-Watson tree
- Gaussian approximations for phylogenetic branch length statistics under stochastic models of biodiversity
- The comb representation of compact ultrametric spaces
- Interspecies correlation for neutrally evolving traits
- Predicting the loss of phylogenetic diversity under non-stationary diversification models
- Phylogenetic analysis accounting for age-dependent death and sampling with applications to epidemics
- The coalescent structure of continuous-time Galton-Watson trees
- A characterisation of the reconstructed birth-death process through time rescaling
- Phylogenetic confidence intervals for the optimal trait value
- Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
- Higher-order dangers and precisely constructed taxa in models of randomness
- A consistent estimator of the evolutionary rate
- Mutational pattern of a sample from a critical branching population
- Population Dynamics and Random Genealogies
- Random ultrametric trees and applications
- Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
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- A branching process with coalescence to model random phylogenetic networks
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- Calculations for multi-type age-dependent binary branching processes
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