The conditioned reconstructed process
From MaRDI portal
Abstract: We investigate a neutral model for speciation and extinction, the constant rate birth-death process. The process is conditioned to have extant species today, we look at the tree distribution of the reconstructed trees-- i.e. the trees without the extinct species. Whereas the tree shape distribution is well-known and actually the same as under the pure birth process, no analytic results for the speciation times were known. We provide the distribution for the speciation times and calculate the expectations analytically. This characterizes the reconstructed trees completely. We will show how the results can be used to date phylogenies.
Recommendations
- Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
- New analytic results for speciation times in neutral models
- Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
- The generalized time variable reconstructed birth-death process
- The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
Cites work
- scientific article; zbMATH DE number 1865935 (Why is no real title available?)
- scientific article; zbMATH DE number 3249395 (Why is no real title available?)
- scientific article; zbMATH DE number 3323598 (Why is no real title available?)
- scientific article; zbMATH DE number 3057657 (Why is no real title available?)
- A critical branching process model for biodiversity
- Asymptotic genealogy of a critical branching process
- Einführung in die Wahrscheinlichkeitstheorie und Statistik
- New analytic results for speciation times in neutral models
- On the Generalized "Birth-and-Death" Process
- Statistical decision theory. Foundations, concepts, and methods
- Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
- Stochastic properties of generalised Yule models, with biodiversity applications
- The probabilities of rooted tree-shapes generated by random bifurcation
Cited in
(48)- Can extinction rates be estimated without fossils?
- Phylogenetic confidence intervals for the optimal trait value
- Universality classes for the coalescent structure of heavy-tailed Galton-Watson trees
- Stochastic properties of generalised Yule models, with biodiversity applications
- Statistical challenges in tracking the evolution of SARS-CoV-2
- The shape of phylogenies under phase-type distributed times to speciation and extinction
- A critical branching process model for biodiversity
- The reconstructed evolutionary process with the fossil record
- Coalescent models derived from birth-death processes
- Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
- A characterisation of the reconstructed birth-death process through time rescaling
- A central limit theorem for punctuated equilibrium
- Estimating primate divergence times by using conditioned birth-and-death processes
- The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
- The expected length of pendant and interior edges of a Yule tree
- Interspecies correlation for neutrally evolving traits
- On the age of a randomly picked individual in a linear birth-and-death process
- Normal approximation for mixtures of normal distributions and the evolution of phenotypic traits
- New analytic results for speciation times in neutral models
- Closed form modeling of evolutionary rates by exponential Brownian functionals
- Identifiability and inference of phylogenetic birth-death models
- Lineages-through-time plots of neutral models for speciation
- Time to a single hybridization event in a group of species with unknown ancestral history
- A phylogenetic comparative method for studying multivariate adaptation
- The coalescent structure of continuous-time Galton-Watson trees
- Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree
- Quantifying the effects of anagenetic and cladogenetic evolution
- Random walk Green kernels in the neutral Moran model conditioned on survivors at a random time to origin
- A consistent estimator of the evolutionary rate
- Random phylogenies and the distribution of branching times
- The generalized time variable reconstructed birth-death process
- On incomplete sampling under birth-death models and connections to the sampling-based coalescent
- Phylogenetic effective sample size
- Some properties of the conditioned reconstructed process with Bernoulli sampling
- Calculations for multi-type age-dependent binary branching processes
- The coalescent point process of branching trees
- Markov genealogy processes
- Sampling-through-time in birth-death trees
- The coalescent point process of multi-type branching trees
- Exact and approximate limit behaviour of the Yule tree's cophenetic index
- Statistical inference for the evolutionary history of cancer genomes
- Probability distribution of tree age for the simple birth-death process, with applications to distributions of number of ancestral lineages and divergence times for pairs of taxa in a Yule tree
- Probability distributions of ancestries and genealogical distances on stochastically generated rooted binary trees
- The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data
- Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
- Receptive process theory
- Predicting the loss of phylogenetic diversity under non-stationary diversification models
- Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements
This page was built for publication: The conditioned reconstructed process
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1796351)
