Phylogenetic confidence intervals for the optimal trait value

DOI10.1239/jap/1450802756zbMath1332.62278arXiv1207.6488OpenAlexW2949771484MaRDI QIDQ2794729

Krzysztof Bartoszek, Serik Sagitov

Publication date: 11 March 2016

Published in: Journal of Applied Probability (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1207.6488

zbMATH Keywords

martingalesOrnstein-Uhlenbeck processcentral limit theoremphylogeneticsmacroevolutionconditioned Yule process

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Markov processes: estimation; hidden Markov models (62M05) Applications of stochastic analysis (to PDEs, etc.) (60H30) Mathematical biology in general (92B99)

Related Items (10)

A consistent estimator of the evolutionary rate ⋮ Phylogenetic effective sample size ⋮ When can we reconstruct the ancestral state? Beyond Brownian motion ⋮ Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations ⋮ Exact and approximate limit behaviour of the Yule tree's cophenetic index ⋮ Time to a single hybridization event in a group of species with unknown ancestral history ⋮ The phylogenetic effective sample size and jumps ⋮ Phase transition on the convergence rate of parameter estimation under an Ornstein-Uhlenbeck diffusion on a tree ⋮ A Central Limit Theorem for punctuated equilibrium ⋮ Normal approximation for mixtures of normal distributions and the evolution of phenotypic traits

Uses Software

• R

Cites Work

• Unnamed Item
• Unnamed Item
• A phylogenetic comparative method for studying multivariate adaptation
• Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
• Asymptotic theory with hierarchical autocorrelation: Ornstein-Uhlenbeck tree models
• \(U\)-statistics of Ornstein-Uhlenbeck branching particle system
• Phase transition on the convergence rate of parameter estimation under an Ornstein-Uhlenbeck diffusion on a tree
• Majority rule has transition ratio 4 on Yule trees under a 2-state symmetric model
• New analytic results for speciation times in neutral models
• Analysis of comparative data with hierarchical autocorrelation
• Lineages-through-time plots of neutral models for speciation
• The conditioned reconstructed process
• Quantifying the effects of anagenetic and cladogenetic evolution
• On the distribution of interspecies correlation for Markov models of character evolution on Yule trees
• CLT for Ornstein-Uhlenbeck branching particle system
• A critical branching process model for biodiversity
• On the Exact Covariance of Products of Random Variables
• Properties of phylogenetic trees generated by Yule-type speciation models

This page was built for publication: Phylogenetic confidence intervals for the optimal trait value