Coalescent models derived from birth-death processes

DOI10.1016/J.TPB.2021.09.003MaRDI QIDQ2076085zbMATH OpenOpenAlexFDO

Authors Fausto F. Crespo, David Posada, Carsten Wiuf

Publication date 18 February 2022

Published in Theoretical Population Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1016/j.tpb.2021.09.003

zbMATH Keywords

Bernoulli samplingconditioned reconstructed processfounder populationKingman coalescencevariable population size coalescence

Mathematics Subject Classification ID

Applications of branching processes (60J85) Population dynamics (general) (92D25)

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Cites work

• A characterisation of the reconstructed birth-death process through time rescaling
• Bayesian evolutionary analysis with BEAST
• Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
• Branching processes in biology
• Coalescence in the diffusion limit of a Bienaymé-Galton-Watson branching process
• Coalescent theory. An introduction
• scientific article; zbMATH DE number 3817476 (Why is no real title available?)
• New analytic results for speciation times in neutral models
• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• On the genealogy and coalescence times of Bienaymé–Galton–Watson branching processes
• On the genealogy of a sample of neutral rare alleles.
• On the genealogy of nested subsamples from a haploid population
• On the Generalized "Birth-and-Death" Process
• Some properties of the conditioned reconstructed process with Bernoulli sampling
• Stochastic epidemic models and their statistical analysis
• The coalescent process in a population with stochastically varying size
• The coalescent structure of continuous-time Galton-Watson trees
• The conditioned reconstructed process
• Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution

Cited in

(4)

• Time inhomogeneous mutation models with birth date dependence
• The bounded coalescent model: conditioning a genealogy on a minimum root date
• Species accumulation functions and pure birth processes
• Structured coalescent processes from a modified Moran model with large offspring numbers

Describes a project that uses

Uses Software

• BEAST
• BEAUti
• DIYABC

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