swMATH12588MaRDI QIDQ24514FDOQ24514
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Official website: http://beast2.org/
Cited In (only showing first 100 items - show all)
- On incomplete sampling under birth-death models and connections to the sampling-based coalescent
- hdtg
- Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
- Inferring contagion patterns in social contact networks with limited infection data
- The coalescence of intrahost HIV lineages under symmetric CTL attack
- Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
- Objective Bayesian analysis for Gaussian hierarchical models with intrinsic conditional autoregressive priors
- Sampling-through-time in birth-death trees
- Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
- ape
- fastDNAml
- MrBayes
- RAxML
- PAUP*
- phangorn
- Seq-Gen
- MEGA
- PhyML
- Arlequin
- LAMARC
- simuPOP
- BEAGLE
- BEAUti
- DPRml
- pIQPNNI
- GPUTeraSort
- rSPR
- BioWar
- SPRSupertrees
- rwty
- Bali-phy
- IQ-TREE
- NINJA
- Phylo-MCOA
- TNT
- phylodyn
- ASTRAL-II
- kdetrees
- TOPD/FMTS
- PhyloNet
- Dendroscope
- ACEMD
- DensiTree
- HyPhy
- Partitionfinder
- BUCKy
- gleamviz
- Tracer
- tree-structured-covariance
- spr_neighbors
- STEM-hy
- diversitree
- Rphylopars
- phyloTop
- bmds
- PhyloNetwork
- FastTree
- DACTAL
- Nextstrain
- Quartets MaxCut
- Rec-I-DCM3
- AFContainer
- SuperFine
- StarBEAST2
- SDLNewick
- ccaPP
- logKDE
- SPhyR
- fastsimcoal
- PoMo
- InterMap3D
- ForSim
- phyloXML
- SimMLST
- Exact limits of inference in coalescent models
- SIMCOAL
- ATV
- treeOclock
- treeio
- Computing nearest neighbour interchange distances between ranked phylogenetic trees
- Discrete coalescent trees
- The space of ultrametric phylogenetic trees
- Slicing and dicing the genome: A statistical physics approach to population genetics
- Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent
- Coalescent models derived from birth-death processes
- Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
- Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies
- RAxML-NG
- Calculations for multi-type age-dependent binary branching processes
- TruncatedNormal
- Estimating transmission from genetic and epidemiological data: a metric to compare transmission trees
- Efficiently inferring pairwise subtree prune-and-regraft adjacencies between phylogenetic trees
- Combinatorial perspectives on Dollo-\(k\) characters in phylogenetics
- A representation-theoretic approach to the calculation of evolutionary distance in bacteria
- Exact and approximate limit behaviour of the Yule tree's cophenetic index
- Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
- Modeling sequence evolution in HIV-1 infection with recombination
- Demographic inference under the coalescent in a spatial continuum
- Sequential Monte Carlo with transformations
- Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
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