BEAST
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Related Items (61)
Inferring contagion patterns in social contact networks with limited infection data ⋮ Finding outbreak trees in networks with limited information ⋮ A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses ⋮ Combinatorial perspectives on Dollo-\(k\) characters in phylogenetics ⋮ Demographic inference under the coalescent in a spatial continuum ⋮ Genetic demographic networks: mathematical model and applications ⋮ On incomplete sampling under birth-death models and connections to the sampling-based coalescent ⋮ Modeling sequence evolution in acute HIV-1 infection ⋮ An adjacent-swap Markov chain on coalescent trees ⋮ Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications ⋮ Enumeration of binary trees compatible with a perfect phylogeny ⋮ The space of ultrametric phylogenetic trees ⋮ Statistical challenges in tracking the evolution of SARS-CoV-2 ⋮ Modeling sequence evolution in HIV-1 infection with recombination ⋮ The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes ⋮ Protein domain hierarchy Gibbs sampling strategies ⋮ Phylogenetic network dissimilarity measures that take branch lengths into account ⋮ Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies ⋮ Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks ⋮ Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2 ⋮ Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph ⋮ Developments in coalescent theory from single loci to chromosomes ⋮ A semiparametric Bayesian approach to epidemics, with application to the spread of the coronavirus MERS in South Korea in 2015 ⋮ Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths ⋮ Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting ⋮ An extended model for phylogenetic maximum likelihood based on discrete morphological characters ⋮ Fitting stochastic epidemic models to gene genealogies using linear noise approximation ⋮ Sampling HIV intrahost genealogies based on a model of acute stage CTL response ⋮ A representation-theoretic approach to the calculation of evolutionary distance in bacteria ⋮ Exact and approximate limit behaviour of the Yule tree's cophenetic index ⋮ Exact limits of inference in coalescent models ⋮ Calculations for multi-type age-dependent binary branching processes ⋮ Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths ⋮ Sampling-through-time in birth-death trees ⋮ Estimating transmission from genetic and epidemiological data: a metric to compare transmission trees ⋮ Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent ⋮ Stochastic epidemic models inference and diagnosis with Poisson random measure data augmentation ⋮ Efficient Bayesian inference of general Gaussian models on large phylogenetic trees ⋮ Objective Bayesian analysis for Gaussian hierarchical models with intrinsic conditional autoregressive priors ⋮ The coalescence of intrahost HIV lineages under symmetric CTL attack ⋮ Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies ⋮ Slicing and dicing the genome: A statistical physics approach to population genetics ⋮ Computing nearest neighbour interchange distances between ranked phylogenetic trees ⋮ Discrete coalescent trees ⋮ Efficiently Inferring Pairwise Subtree Prune-and-Regraft Adjacencies between Phylogenetic Trees ⋮ Consistency and identifiability of the polymorphism-aware phylogenetic models ⋮ Representations of Partial Leaf Sets in Phylogenetic Tree Space ⋮ The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events ⋮ Bayesian-weighted triplet and quartet methods for species tree inference ⋮ Assessing phenotypic correlation through the multivariate phylogenetic latent liability model ⋮ Sequential Monte Carlo with transformations ⋮ Comment on article by Rubio and Steel ⋮ Uncertainty in Phylogenetic Tree Estimates ⋮ Partition Weighted Approach For Estimating the Marginal Posterior Density With Applications ⋮ Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret ⋮ Coalescent models derived from birth-death processes ⋮ Large-Scale Multiple Sequence Alignment and Phylogeny Estimation ⋮ Visualizing Codon Usage Within and Across Genomes: Concepts and Tools ⋮ Consistency of a phylogenetic tree maximum likelihood estimator ⋮ Batch Matrix Exponentiation ⋮ Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
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