Calculations for multi-type age-dependent binary branching processes

DOI10.1007/S00285-010-0362-8MaRDI QIDQ659002zbMATH OpenOpenAlexWikidataFDO

Authors Graham Jones

Publication date 9 February 2012

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-010-0362-8

zbMATH Keywords

Bellman-HarrisTreeBayesian phylogenetic analysisCell proliferationMacroevolutionTree shape

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Branching processes (Galton-Watson, birth-and-death, etc.) (60J80) Volterra integral equations (45D05) Computational methods for problems pertaining to biology (92-08)

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• Expectation maximization estimates of the offspring probabilities in a class of multitype branching processes with binary family trees
• Extinction moment for a branching tree evolution with birth rate and death rate both depending on age

Cites work

• scientific article; zbMATH DE number 44242 (Why is no real title available?)
• scientific article; zbMATH DE number 850224 (Why is no real title available?)
• scientific article; zbMATH DE number 3410334 (Why is no real title available?)
• A Stochastic Model to Analyze Clonal Data on Multi‐Type Cell Populations
• A critical branching process model for biodiversity
• Branching processes in biology
• Inference for an age-dependent, multitype branching-process model of mast cells
• MrBayes
• On age-dependent binary branching processes
• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• Properties of phylogenetic trees generated by Yule-type speciation models
• Saddlepoint approximations to the moments of multitype age-dependent branching processes, with applications
• Statistical decision theory and Bayesian analysis. 2nd ed
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• Stochastic properties of generalised Yule models, with biodiversity applications
• The conditioned reconstructed process

Cited in

(3)

• Topology and inference for Yule trees with multiple states
• Fitting Markovian binary trees using global and individual demographic data
• Complete classification of catalytic branching processes

Describes a project that uses

Uses Software

• BEAST
• MrBayes
• R

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