Consistency and identifiability of the polymorphism-aware phylogenetic models

DOI10.1016/j.jtbi.2019.110074zbMath1429.92109OpenAlexW2984403414WikidataQ91231629 ScholiaQ91231629MaRDI QIDQ2288467

Carolin Kosiol, Rui Borges

Publication date: 20 January 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2019.110074

zbMATH Keywords

consistencyidentifiabilityphylogeneticsspecies tree estimationpolymorphism-aware models

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Uses Software

• BEAST
• IQ-TREE
• PoMo

Cites Work

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• Reversible polymorphism-aware phylogenetic models and their application to tree inference
• The performance of neighbor-joining methods of phylogenetic reconstruction
• Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.
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• Recovering a tree from the leaf colourations it generates under a Markov model
• Letter to editor: Rate-variation need not defeat phylogenetic inference through pairwise sequence comparisons
• An alternative derivation of the stationary distribution of the multivariate neutral Wright-Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data
• Consistency of Bayesian inference of resolved phylogenetic trees
• Probability Models for DNA Sequence Evolution
• Lie Groups, Lie Algebras, and Representations
• Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
• Note on the Consistency of the Maximum Likelihood Estimate

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