An alternative derivation of the stationary distribution of the multivariate neutral Wright-Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data

DOI10.1016/J.TPB.2016.12.001zbMATH Open1369.92075OpenAlexW2561074856WikidataQ31152266 ScholiaQ31152266MaRDI QIDQ2399079FDOQ2399079

Dominik Schrempf, Asger Hobolth

Publication date: 21 August 2017

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tpb.2016.12.001

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zbMATH Keywords

diffusion equationstationary distributionMoran modelWright-Fisher modelboundary mutation model

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Cites Work

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• Probability Models for DNA Sequence Evolution
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• The allele-frequency spectrum in a decoupled Moran model with mutation, drift, and directional selection, assuming small mutation rates
• Inference of directional selection and mutation parameters assuming equilibrium
• Reversible polymorphism-aware phylogenetic models and their application to tree inference
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• A transition density expansion for a multi-allele diffusion model
• Diffusion models in population genetics
• A coalescent dual process in a Moran model with genic selection
• An approximate stationary solution for multi-allele neutral diffusion with low mutation rates

Cited In (10)

• Maximum likelihood estimators for scaled mutation rates in an equilibrium mutation-drift model
• The stationary and quasi-stationary properties of neutral multi-type branching process diffusions
• Inference from the stationary distribution of allele frequencies in a family of Wright-Fisher models with two levels of genetic variability
• Stationary distribution of a 2-island 2-allele wright-Fisher diffusion model with slow mutation and migration rates
• Fixation in the stochastic Lotka-Volterra model with small fitness trade-offs
• An evolutionary model that satisfies detailed balance
• Consistency and identifiability of the polymorphism-aware phylogenetic models
• The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
• The transition distribution of a sample from a Wright-Fisher diffusion with general small mutation rates
• Title not available (Why is that?)

Uses Software

• IQ-TREE
• PoMo
• DFVLR-SQP

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