A coalescent dual process in a Moran model with genic selection

DOI10.1016/j.tpb.2009.03.004zbMath1213.92038OpenAlexW2083536199WikidataQ60500178 ScholiaQ60500178MaRDI QIDQ615620

Robert C. Griffiths, Alison M. Etheridge

Publication date: 5 January 2011

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tpb.2009.03.004

zbMATH Keywords

harmonic measurecoalescent processWright-Fisher diffusionancestral selection graph

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70)

Related Items (35)

Inference of directional selection and mutation parameters assuming equilibrium ⋮ Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution ⋮ On the stationary distribution of the block counting process for population models with mutation and selection ⋮ Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations ⋮ An alternative derivation of the stationary distribution of the multivariate neutral Wright-Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data ⋮ General selection models: Bernstein duality and minimal ancestral structures ⋮ Genealogical properties of subsamples in highly fecund populations ⋮ Maximum likelihood estimators for scaled mutation rates in an equilibrium mutation-drift model ⋮ An evolutionary model that satisfies detailed balance ⋮ Tree-valued Fleming-Viot dynamics with mutation and selection ⋮ Spatially inhomogeneous populations with seed-banks. I: Duality, existence and clustering ⋮ On the boundary classification of \(\Lambda\)-Wright-Fisher processes with frequency-dependent selection ⋮ Approximate filtering via discrete dual processes ⋮ The site-frequency spectrum of linked sites ⋮ The common ancestor process revisited ⋮ Unnamed Item ⋮ Unnamed Item ⋮ A coalescent dual process in a Moran model with genic selection, and the lambda coalescent limit ⋮ Generalized population models and the nature of genetic drift ⋮ A dual process for the coupled Wright-Fisher diffusion ⋮ On Λ-Fleming–Viot processes with general frequency-dependent selection ⋮ A coalescent dual process in a Moran model with genic selection, and the lambda coalescent limit ⋮ Inference in population genetics using forward and backward, discrete and continuous time processes ⋮ Dualities in population genetics: a fresh look with new dualities ⋮ The structure of allelic diversity in the presence of purifying selection ⋮ The allele-frequency spectrum in a decoupled Moran model with mutation, drift, and directional selection, assuming small mutation rates ⋮ A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning ⋮ Rate matrix estimation from site frequency data ⋮ Dynamics of a Fleming-Viot type particle system on the cycle graph ⋮ Wright-Fisher diffusion bridges ⋮ Estimating the scaled mutation rate and mutation bias with site frequency data ⋮ On the retention of gene duplicates prone to dominant deleterious mutations ⋮ A nearly-neutral biallelic Moran model with biased mutation and linear and quadratic selection ⋮ Structural properties of the seed bank and the two island diffusion ⋮ Exact simulation of coupled Wright–Fisher diffusions

Cites Work

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• Duality, ancestral and diffusion processes in models with selection
• The transition function of a Fleming-Viot process
• Line-of-descent and genealogical processes, and their applications in population genetics models
• Lines of descent and the coalescent
• The population genealogy of the infinitely-many neutral alleles model
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• The coalescent
• Ancestral processes with selection
• Genealogical processes for Fleming-Viot models with selection and recombination
• A transition function expansion for a diffusion model with selection.
• Simulating allele frequencies in a population and the genetic differentiation of populations under mutation pressure
• The common ancestor at a nonneutral locus
• Ancestral Inference in Population Genetics Models with Selection (with Discussion)
• Coalescent lineage distributions

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