Duality, ancestral and diffusion processes in models with selection

DOI10.1016/J.TPB.2009.01.007MaRDI QIDQ615593zbMATH OpenOpenAlexWikidataFDO

Authors Shuhei Mano

Publication date 5 January 2011

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/0804.2696

zbMATH Keywords

diffusion modelancestral selection graphbirth and death processancestral processcoalescent model

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Problems related to evolution (92D15) Applications of branching processes (60J85)

Abstract: The ancestral selection graph in population genetics was introduced by KroneNeuhauser (1997) as an analogue of the coalescent genealogy of a sample of genes from a neutrally evolving population. The number of particles in this graph, followed backwards in time, is a birth and death process with quadratic death and linear birth rates. In this paper an explicit form of the probability distribution of the number of particles is obtained by using the density of the allele frequency in the corresponding diffusion model obtained by Kimura (1955). It is shown that the process of fixation of the allele in the diffusion model corresponds to convergence of the ancestral process to its stationary measure. The time to fixation of the allele conditional on fixation is studied in terms of the ancestral process.

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Cites work

• scientific article; zbMATH DE number 3127704 (Why is no real title available?)
• scientific article; zbMATH DE number 3138903 (Why is no real title available?)
• scientific article; zbMATH DE number 3817476 (Why is no real title available?)
• scientific article; zbMATH DE number 3951715 (Why is no real title available?)
• scientific article; zbMATH DE number 176645 (Why is no real title available?)
• scientific article; zbMATH DE number 3493681 (Why is no real title available?)
• scientific article; zbMATH DE number 3088518 (Why is no real title available?)
• scientific article; zbMATH DE number 3107429 (Why is no real title available?)
• Ancestral processes with selection
• Branching-coalescing particle systems
• Conditional diffusion processes in population genetics
• Diffusion processes in population genetics
• Exact sampling distributions from the infinite neutral alleles model
• Line-of-descent and genealogical processes, and their applications in population genetics models
• On the two-locus sampling distribution
• Some Problems of Stochastic Processes in Genetics
• The coalescent
• The common ancestor at a nonneutral locus

Cited in

(24)

• The fixation probability and time for a doubly beneficial mutant
• Combinatorics of ancestral lines for a Wright-Fisher diffusion with selection in a Lévy environment
• The common ancestor process revisited
• Ancestral graph with bias in gene conversion
• A dual process for the coupled Wright-Fisher diffusion
• Tree-valued Fleming-Viot dynamics with mutation and selection
• The star-shaped \(\Lambda\)-coalescent and Fleming-Viot process
• Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
• Developments in coalescent theory from single loci to chromosomes
• scientific article; zbMATH DE number 6914440 (Why is no real title available?)
• The conditional ancestral selection graph with strong balancing selection
• A coalescent dual process in a Moran model with genic selection
• Common ancestor type distribution: a Moran model and its deterministic limit
• The Moran model with selection: fixation probabilities, ancestral lines, and an alternative particle representation
• Nonconservative diffusions on \([0, 1]\) with killing and branching: applications to Wright-Fisher models with or without selection
• Lines of descent in the deterministic mutation-selection model with pairwise interaction
• Duality between the two-locus Wright-Fisher diffusion model and the ancestral process with recombination
• The ancestral selection graph under strong directional selection
• Genealogies and ages of cultural traits: an application of the theory of duality to the research on cultural evolution
• On the fixation probability of an advantageous allele in a population with skewed offspring distribution
• Duality and fixation in \(\Xi\)-Wright-Fisher processes with frequency-dependent selection
• General selection models: Bernstein duality and minimal ancestral structures
• A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent
• The Wright-Fisher model with efficiency

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