Duality, ancestral and diffusion processes in models with selection

DOI10.1016/J.TPB.2009.01.007zbMATH Open1211.92043arXiv0804.2696OpenAlexW1963690701WikidataQ83707786 ScholiaQ83707786MaRDI QIDQ615593FDOQ615593

Shuhei Mano

Publication date: 5 January 2011

Published in: Theoretical Population Biology (Search for Journal in Brave)

Abstract: The ancestral selection graph in population genetics was introduced by KroneNeuhauser (1997) as an analogue of the coalescent genealogy of a sample of genes from a neutrally evolving population. The number of particles in this graph, followed backwards in time, is a birth and death process with quadratic death and linear birth rates. In this paper an explicit form of the probability distribution of the number of particles is obtained by using the density of the allele frequency in the corresponding diffusion model obtained by Kimura (1955). It is shown that the process of fixation of the allele in the diffusion model corresponds to convergence of the ancestral process to its stationary measure. The time to fixation of the allele conditional on fixation is studied in terms of the ancestral process.

Full work available at URL: https://arxiv.org/abs/0804.2696

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zbMATH Keywords

diffusion modelancestral selection graphbirth and death processancestral processcoalescent model

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Problems related to evolution (92D15) Applications of branching processes (60J85)

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Cited In (20)

• The common ancestor process revisited
• The star-shaped Λ-coalescent and Fleming–Viot process
• A dual process for the coupled Wright-Fisher diffusion
• Tree-valued Fleming-Viot dynamics with mutation and selection
• Duality Between the Two-Locus Wright–Fisher Diffusion Model and the Ancestral Process with Recombination
• Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
• Title not available (Why is that?)
• Developments in coalescent theory from single loci to chromosomes
• The conditional ancestral selection graph with strong balancing selection
• A coalescent dual process in a Moran model with genic selection
• Common ancestor type distribution: a Moran model and its deterministic limit
• The Moran model with selection: fixation probabilities, ancestral lines, and an alternative particle representation
• Nonconservative diffusions on \([0, 1]\) with killing and branching: applications to Wright-Fisher models with or without selection
• On the fixation probability of an advantageous allele in a population with skewed offspring distribution
• Genealogies and ages of cultural traits: an application of the theory of duality to the research on cultural evolution
• The ancestral selection graph under strong directional selection
• Ancestral Graph with Bias in Gene Conversion
• A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent
• The Wright-Fisher model with efficiency
• The fixation probability and time for a doubly beneficial mutant

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