The conditional ancestral selection graph with strong balancing selection

DOI10.1016/J.TPB.2009.04.002MaRDI QIDQ615624zbMATH OpenOpenAlexWikidataFDO

Authors John Wakeley, Ori Sargsyan

Publication date 5 January 2011

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2009.04.002

zbMATH Keywords

structured coalescent

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Probabilistic models, generic numerical methods in probability and statistics (65C20) Problems related to evolution (92D15)

Recommendations

• Ancestral processes with selection
• A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism.
• Duality, ancestral and diffusion processes in models with selection
• The ancestral selection graph under strong directional selection
• Simulation of selected genealogies.

Cites work

• A convergence theorem for markov chains arising in population genetics and the coalescent with selfing
• A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism.
• Ancestral Inference in Population Genetics Models with Selection (with Discussion)
• Ancestral processes with selection
• Ancestral processes with selection: branching and Moran models
• Approximation of Stochastic Processes by Gaussian Diffusions, and Applications to Wright-Fisher Genetic Models
• Coalescence in a random background.
• Coalescent theory. An introduction
• Duality, ancestral and diffusion processes in models with selection
• Genealogical processes for Fleming-Viot models with selection and recombination
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• Markov Chains
• Mathematical population genetics. I: Theoretical introduction.
• Most recent common ancestor probability distributions in gene genealogies under selection.
• Simulation of selected genealogies.
• The coalescent
• The coalescent and genealogical process in geographically structured population
• The common ancestor at a nonneutral locus
• The two-locus ancestral graph in a subdivided population: convergence as the number of demes grows in the island model

Cited in

(9)

• Duality and fixation in \(\Xi\)-Wright-Fisher processes with frequency-dependent selection
• Tree-valued Fleming-Viot dynamics with mutation and selection
• The common ancestor process revisited
• A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism.
• An application of the central limit theorem to coalescence times in the structured coalescent model with strong migration
• Duality, ancestral and diffusion processes in models with selection
• Large-sample analysis of cost functionals for inference under the coalescent
• Analysis of a stochastic predator-prey model with applications to intrahost HIV genetic diversity
• The ancestral selection graph under strong directional selection

Describes a project that uses

Uses Software

• Mathematica

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