On the two-locus sampling distribution

DOI10.1007/BF00168175MaRDI QIDQ807449zbMATH OpenOpenAlexWikidataFDO

Authors Stewart N. Ethier, Robert Griffiths

Publication date 1990

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/bf00168175

zbMATH Keywords

Ewens sampling formulacomplete linkagemeasure-valued diffusiongenealogical processesdistribution of gametic typesindependent lociinfinitely many neutral allelesjoint distribution of the sample configurationnumber of recombination eventstwo-locus stationary diffusion modeltwo-locus version of an urn model

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10)

Recommendations

• The neutral two-locus model as a measure-valued diffusion
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Cites work

• scientific article; zbMATH DE number 176645 (Why is no real title available?)
• Neutral two-locus multiple allele models with recombination
• Pólya-like urns and the Ewens' sampling formula
• The infinitely-many-sites model as a measure-valued diffusion
• The neutral two-locus model as a measure-valued diffusion
• The sampling theory of selectively neutral alleles
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination

Cited in

(18)

• Recoverability of ancestral recombination graph topologies
• Tractable diffusion and coalescent processes for weakly correlated loci
• Consistency of estimators of the population-scaled recombination rate
• An asymptotic sampling formula for the coalescent with recombination
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination
• Which locus has the oldest allele?
• Recombination as a point process along sequences
• The effect on genetic sampling distributions of correlations in reproduction
• Duality, ancestral and diffusion processes in models with selection
• Duality between the two-locus Wright-Fisher diffusion model and the ancestral process with recombination
• The neutral frequency spectrum of linked sites
• Closed-form asymptotic sampling distributions under the coalescent with recombination for an arbitrary number of loci
• Analytic computation of the expectation of the linkage disequilibrium coefficient \(r^2\)
• Importance sampling and the two-locus model with subdivided population structure
• A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning
• Asymptotic sampling distributions made easy: loose linkage in the ancestral recombination graph
• The coalescent in two colonies with symmetric migration
• Padé approximants and exact two-locus sampling distributions

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